PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010928206.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 280aa MW: 30975.7 Da PI: 7.1614

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010928206.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.5	2.9e-33	32	86	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLH+rFveav+qLGG+e+AtPk +l++m+v+gLt++hvkSHLQkYRl XP_010928206.1 32 RQRLRWTHELHQRFVEAVTQLGGPERATPKGVLRAMGVQGLTIYHVKSHLQKYRL 86 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.599	29	89	IPR017930	Myb domain
SuperFamily	SSF46689	3.05E-17	31	86	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.6E-32	31	87	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-25	33	87	IPR006447	Myb domain, plants
Pfam	PF00249	3.2E-9	34	85	IPR001005	SANT/Myb domain
Pfam	PF14379	8.2E-22	118	164	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MLAHDQQMEM NVETSGSKGE RNNPCNPGLA SRQRLRWTHE LHQRFVEAVT QLGGPERATP 60 KGVLRAMGVQ GLTIYHVKSH LQKYRLAKYI PESSSDGTKS DKKEPGDLLP TVDNSSGMQI 120 TEALKLQMEV QKRLQEQLEV QRQLQLRIEA QGKYLKKIVE EQQRLSSVLT GASGLGNTTT 180 IFGDPHLDDK TDPPTPASTS ESPIEGKGTS NHRVDCGLVK SLPHDELFSF HHEPMTPDSS 240 CARSPDSPKR EQRVKEQQGT GSLENAGLMH SNHILESSSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-23	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-23	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-23	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-23	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019707781.2	0.0	myb family transcription factor PHL7
Swissprot	Q9SJW0	1e-97	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2H3YBZ1	1e-170	A0A2H3YBZ1_PHODC; myb family transcription factor PHL7-like
STRING	XP_008796527.1	1e-171	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	8e-84	G2-like family protein