PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010927660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 467aa MW: 50489.8 Da PI: 8.4137 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.7 | 6e-11 | 57 | 83 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C+yG +C+++H+p XP_010927660.1 57 PGEPDCAYYLRTGLCRYGLTCRYNHPP 83 5789*********************96 PP | |||||||
2 | zf-CCCH | 39.1 | 1.2e-12 | 104 | 128 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_010927660.1 104 QPECQYYLKTGTCKFGATCKFHHPK 128 799********************96 PP | |||||||
3 | zf-CCCH | 36 | 1.2e-11 | 150 | 174 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ XP_010927660.1 150 EKECAYYLRTGQCKFGNTCKFHHPQ 174 679********************97 PP | |||||||
4 | zf-CCCH | 41.5 | 2.3e-13 | 310 | 335 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ XP_010927660.1 310 DQPECQFYMKTGDCKFGAACKFHHPK 335 689*********************96 PP | |||||||
5 | zf-CCCH | 37.9 | 2.9e-12 | 355 | 381 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_010927660.1 355 PGEPLCVFYSRYGICKFGPNCKFDHPM 381 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.258 | 56 | 84 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 56 | 83 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-8 | 58 | 83 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-5 | 61 | 84 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 101 | 129 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-6 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-10 | 104 | 128 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 105 | 130 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 107 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.55E-7 | 146 | 175 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 147 | 175 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-5 | 147 | 174 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-9 | 150 | 174 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-4 | 153 | 173 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.647 | 308 | 336 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 308 | 335 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-10 | 310 | 335 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 311 | 338 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-5 | 314 | 336 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.197 | 354 | 382 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.9E-8 | 354 | 381 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-9 | 356 | 381 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 357 | 381 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-4 | 359 | 379 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MDYDGAGIQT RGARAAAAAV TEASSSSLAP ALDEETMWQM NKRGSESVES GLYPERPGEP 60 DCAYYLRTGL CRYGLTCRYN HPPDRKLAIA AARIRGGYPE RVGQPECQYY LKTGTCKFGA 120 TCKFHHPKDK AGIFGRAPLN NLGYPIRPNE KECAYYLRTG QCKFGNTCKF HHPQPSNAMV 180 SLRGSPVYPP VSPASPGQQS YPGGLTSWPL SSTSFIPSPR WQGPSSYAQL ILPQGLVQVP 240 SWNAYPGHLG SVSSSESQQQ TPGTVQMYGS SRPSETSVGV QGTMSSYRSS STPMGQYALQ 300 RDNVFPERPD QPECQFYMKT GDCKFGAACK FHHPKERLVP APNCVLSPLG LPLRPGEPLC 360 VFYSRYGICK FGPNCKFDHP MATPMGIFAY SLSTSLSADA PVVRRLLASS SGPPALSLSS 420 EHPVEASTGN SRRLSMSESR QMASGDEDVE AEGSHATTSI GPVSSFS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010927660.2 | 0.0 | LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein ZFN-like | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A2H3Y871 | 0.0 | A0A2H3Y871_PHODC; zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
STRING | XP_008794629.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-152 | zinc finger protein 1 |