PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010926967.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HB-other

Protein Properties

Length: 486aa MW: 55130.6 Da PI: 9.5829

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010926967.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.5	2.4e-18	15	71	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + kR t+ q+e+Le+++++++yps+ ++ + Ak++gL+e+qV+ WF+ rR k+kk XP_010926967.1 15 KTKRKMKTQAQVEALEKFYNEHKYPSEPMKLQFAKQIGLSEKQVSGWFCHRRLKDKK 71 679****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.293	12	72	IPR001356	Homeobox domain
SMART	SM00389	6.6E-18	14	76	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-17	14	78	IPR009057	Homeodomain-like
Pfam	PF00046	4.1E-16	15	71	IPR001356	Homeobox domain
CDD	cd00086	8.29E-15	15	71	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.9E-19	17	71	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MEGSYYKEKT VSPEKTKRKM KTQAQVEALE KFYNEHKYPS EPMKLQFAKQ IGLSEKQVSG 60 WFCHRRLKDK KLMQGEVYAN GKYNGLVHDR TSGLRQESCS STKQGDRYFD LKEVESKRSY 120 GQSSSSAVLA LEQRARQFTV GCHASADDRS SGSSSASQGR LLQQVEDPSS LVSSGYPYQG 180 DNYMLMNTMG VKSRGLMMHS RYSYFQVENE HPAISSVKRK LGRHYCEDGP PLGVNFDPLP 240 PGAFDSPIRD SNFEPYYVGD SMLHGASCIP RITKETKVYN KYRHEERSND SCLEATGFRK 300 RMQRFVDQDG LLGCQLNSKA SLTKQSGSVP KQTCLVEKIE AFSGKYSDYN SQSNERRAKY 360 RTKEGENSVG HLFHINGQKA YTNTPFPYPH NHYNYNSQVS QSEEFKESKF SKSACKSNNF 420 LDTEDVVMPR RPPKLGRKVS SMQFQQQGYV TKSEKYSRKK PVLRNNGNMA TTLSEDETGG 480 TASSIE

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MEGSYYKEKT VSPEKTKRKM KTQAQVEALE KFYNEHKYPS EPMKLQFAKQ IGLSEKQVSG  60
WFCHRRLKDK KLMQGEVYAN GKYNGLVHDR TSGLRQESCS STKQGDRYFD LKEVESKRSY  120
GQSSSSAVLA LEQRARQFTV GCHASADDRS SGSSSASQGR LLQQVEDPSS LVSSGYPYQG  180
DNYMLMNTMG VKSRGLMMHS RYSYFQVENE HPAISSVKRK LGRHYCEDGP PLGVNFDPLP  240
PGAFDSPIRD SNFEPYYVGD SMLHGASCIP RITKETKVYN KYRHEERSND SCLEATGFRK  300
RMQRFVDQDG LLGCQLNSKA SLTKQSGSVP KQTCLVEKIE AFSGKYSDYN SQSNERRAKY  360
RTKEGENSVG HLFHINGQKA YTNTPFPYPH NHYNYNSQVS QSEEFKESKF SKSACKSNNF  420
LDTEDVVMPR RPPKLGRKVS SMQFQQQGYV TKSEKYSRKK PVLRNNGNMA TTLSEDETGG  480
TASSIE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010926967.1	0.0	uncharacterized protein LOC105049106 isoform X2
TrEMBL	A0A2H3YI06	0.0	A0A2H3YI06_PHODC; uncharacterized protein LOC103713842
STRING	XP_008799104.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25496	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	3e-47	HB-other family protein