PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010926338.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 260aa MW: 29586.7 Da PI: 4.5045 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61 | 1.8e-19 | 57 | 110 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe +++++ +++++LA+ lgL+ rqV +WFqNrRa++k XP_010926338.1 57 KKRRLSVDQVKTLEKNFEVENKLDPDRKARLAQDLGLQPRQVAIWFQNRRARWK 110 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.4 | 3e-41 | 56 | 148 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kL+p+rK++la++Lglqprqva+WFqnrRAR+ktkqlE+dy aL+++y++lk + ++L++++e+L +e+++ XP_010926338.1 56 EKKRRLSVDQVKTLEKNFEVENKLDPDRKARLAQDLGLQPRQVAIWFQNRRARWKTKQLERDYGALRTRYETLKIDCDTLRHDKEKLISEIEA 148 69*************************************************************************************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.989 | 52 | 112 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-19 | 52 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.6E-19 | 55 | 116 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.27E-16 | 57 | 113 | No hit | No description |
Pfam | PF00046 | 1.1E-16 | 57 | 110 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-20 | 59 | 119 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.8E-6 | 83 | 92 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 87 | 110 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.8E-6 | 92 | 108 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.0E-16 | 112 | 153 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MTKHSSSDSF GSLQEKETVQ EKGKYEDRFQ SMMDGAEEVE CEEEELCSNG QSALGEKKRR 60 LSVDQVKTLE KNFEVENKLD PDRKARLAQD LGLQPRQVAI WFQNRRARWK TKQLERDYGA 120 LRTRYETLKI DCDTLRHDKE KLISEIEALK AKLTNSATIT ILENKEAEER PALIYRDGAS 180 DSDSSVVFND ENSPYSGVVL DQDYFAGFKS YSSSSPSLFE SRALGQKDYL AEGFLSGEEL 240 CSALFSEEQE ASLSWYCSEG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 87 | DRKARLA |
2 | 104 | 112 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010926338.1 | 0.0 | homeobox-leucine zipper protein HOX8 | ||||
Swissprot | Q338Z7 | 5e-55 | HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8 | ||||
Swissprot | Q6V9S9 | 3e-55 | HOX8_ORYSI; Homeobox-leucine zipper protein HOX8 | ||||
TrEMBL | A0A2H3XDH8 | 1e-149 | A0A2H3XDH8_PHODC; homeobox-leucine zipper protein HOX13-like | ||||
STRING | XP_008782176.1 | 1e-150 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3009 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 3e-55 | homeobox protein 16 |
Publications ? help Back to Top | |||
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