PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010926291.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

CAMTA

Protein Properties

Length: 1044aa MW: 117897 Da PI: 5.7105

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010926291.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	182.3	5.3e-57	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 l+ ++rwl+++ei++iL+n++k++++ e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+een++fqr XP_010926291.1 20 LEAQRRWLRPTEICEILQNYRKFRIAPEPPNKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQR 114 56799**************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+Lee++ +ivlvhylevk XP_010926291.1 115 RSYWMLEEDYMHIVLVHYLEVK 136 *****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	85.163	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	9.2E-79	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.2E-50	21	135	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	7.4E-5	457	543	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	2.8E-16	458	544	IPR014756	Immunoglobulin E-set
Pfam	PF01833	4.8E-7	458	536	IPR002909	IPT domain
PROSITE profile	PS50297	19.253	626	755	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.1E-19	637	756	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.11E-16	650	753	No hit	No description
SuperFamily	SSF48403	7.62E-19	650	756	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	8.576	661	693	IPR002110	Ankyrin repeat
Pfam	PF12796	1.1E-7	666	756	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0042	694	723	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	8.897	694	726	IPR002110	Ankyrin repeat
SMART	SM00248	560	733	762	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.12E-7	866	920	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.064	869	891	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.59	870	899	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.002	871	890	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.02	892	914	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.865	893	921	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.9E-4	895	914	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1044 aa Download sequence Send to blast
MADARRYGLT PQLDIEQILL EAQRRWLRPT EICEILQNYR KFRIAPEPPN KPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGEENE NFQRRSYWML 120 EEDYMHIVLV HYLEVKGNKP SFGRTRDVQE TAQVVNMDSP VCSNSFTNHS QLPSQTTDAE 180 SPNSAHTSEY EDAESADNYQ ASSRYNSFLE MQQYGDGPVM DVRLRNPHFP IASINNQCDI 240 QGTQAAEPKS DFNSVAQEDF MRVFDGTGLG LTFSGPRTQY DLTSWDEVLE HCTTGFQTPP 300 FHPGQAAAVE DNPRLETSTG ELYTDELGVK QVDVTTTLDK SLWQLTTADI GLLGTSNAVL 360 ENGMSIEENV NAPFLIKQAS LDFSNMEREG LKKYDSFSRW VSKELGEVDD SHPISNSGVY 420 WDTVQSESVI EDSGMSNHAR LDAYIMSPSL SQDQLFSIID FTPNWAYTGM ETKILITGTF 480 LKNKEDVEKC QWSCMFGEIE VPAELLADGT LRCHAPLHKS GRVPFYITCS NRLACSEVRE 540 FEFRVDDAQD METLDSHGYD TNEMHLHVRL EKLLNLGPVD QQKVVANSVK EHLHLSNKIS 600 SLMMEFDDEW SNLLKLTHEE GFSPDNAKDQ LLEKLMKEKL HSWLLHKVAE DGKGPNVLDN 660 EGQGVLHLAA ALGYDWAIKP TITSGVNINF RDVHGWTALH WAAYCGRERT VVALIALGAA 720 PGVLTDPTPE FPTGRTPADL ASANGHKGIA GFLAESSLTN HLSTLTLKES EGSDIAELSG 780 ITDVEDVVEK SAIQVADGDL QAGLSLKDSL TAVRNASLAA ARIYQVFRVH SFHRKKLIEY 840 GDDKCGTSDE RALSLIYLKT AKPGQHDMPQ HAAAIRIQNK FRGWKGRKEF LIIRQRIVKI 900 QAHVRGHQVR KHHKKIIWTV SIVEKAILRW RRKGSGLRGF RSEGLLEGRS TQNQAVKEDD 960 YDFLQEGRKQ TEARLQKALA RVKSMVQYPE ARDQYRRLVN VVTELQESKA MQDRILNESS 1020 EAADGDFMIE LEELWQDDTP MPTA

Sequence ? help Back to Top

Protein Sequence Length: 1044 aa Download sequence Send to blast

MADARRYGLT PQLDIEQILL EAQRRWLRPT EICEILQNYR KFRIAPEPPN KPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGEENE NFQRRSYWML  120
EEDYMHIVLV HYLEVKGNKP SFGRTRDVQE TAQVVNMDSP VCSNSFTNHS QLPSQTTDAE  180
SPNSAHTSEY EDAESADNYQ ASSRYNSFLE MQQYGDGPVM DVRLRNPHFP IASINNQCDI  240
QGTQAAEPKS DFNSVAQEDF MRVFDGTGLG LTFSGPRTQY DLTSWDEVLE HCTTGFQTPP  300
FHPGQAAAVE DNPRLETSTG ELYTDELGVK QVDVTTTLDK SLWQLTTADI GLLGTSNAVL  360
ENGMSIEENV NAPFLIKQAS LDFSNMEREG LKKYDSFSRW VSKELGEVDD SHPISNSGVY  420
WDTVQSESVI EDSGMSNHAR LDAYIMSPSL SQDQLFSIID FTPNWAYTGM ETKILITGTF  480
LKNKEDVEKC QWSCMFGEIE VPAELLADGT LRCHAPLHKS GRVPFYITCS NRLACSEVRE  540
FEFRVDDAQD METLDSHGYD TNEMHLHVRL EKLLNLGPVD QQKVVANSVK EHLHLSNKIS  600
SLMMEFDDEW SNLLKLTHEE GFSPDNAKDQ LLEKLMKEKL HSWLLHKVAE DGKGPNVLDN  660
EGQGVLHLAA ALGYDWAIKP TITSGVNINF RDVHGWTALH WAAYCGRERT VVALIALGAA  720
PGVLTDPTPE FPTGRTPADL ASANGHKGIA GFLAESSLTN HLSTLTLKES EGSDIAELSG  780
ITDVEDVVEK SAIQVADGDL QAGLSLKDSL TAVRNASLAA ARIYQVFRVH SFHRKKLIEY  840
GDDKCGTSDE RALSLIYLKT AKPGQHDMPQ HAAAIRIQNK FRGWKGRKEF LIIRQRIVKI  900
QAHVRGHQVR KHHKKIIWTV SIVEKAILRW RRKGSGLRGF RSEGLLEGRS TQNQAVKEDD  960
YDFLQEGRKQ TEARLQKALA RVKSMVQYPE ARDQYRRLVN VVTELQESKA MQDRILNESS  1020
EAADGDFMIE LEELWQDDTP MPTA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hry_A	2e-11	635	753	43	155	ank3C2_1
5hry_B	2e-11	635	753	43	155	ank3C2_1
5hry_C	2e-11	635	753	43	155	ank3C2_1
5hry_D	2e-11	635	753	43	155	ank3C2_1
5hry_E	2e-11	635	753	43	155	ank3C2_1
5hry_F	2e-11	635	753	43	155	ank3C2_1
5hry_G	2e-11	635	753	43	155	ank3C2_1
5hry_H	2e-11	635	753	43	155	ank3C2_1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010926291.1	0.0	calmodulin-binding transcription activator 3
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A2H3Y9U6	0.0	A0A2H3Y9U6_PHODC; calmodulin-binding transcription activator 3-like isoform X1
STRING	XP_008782144.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP608	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]