PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925945.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ZF-HD
Protein Properties Length: 342aa    MW: 36571.9 Da    PI: 9.4951
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925945.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.61.3e-32112167258
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     ++vrY+eCl+NhAa++Ggh+vDGCgEfmp  ge gt++alkCaACgCHR+FHR++v+
  XP_010925945.1 112 SSVRYRECLRNHAAAVGGHVVDGCGEFMPL-GEAGTTDALKCAACGCHRSFHRKDVD 167
                     579**************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.8E-29114166IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-19114167IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.9E-28115165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.909116165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.67E-19250315IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-28253316IPR009057Homeodomain-like
TIGRFAMsTIGR015655.4E-26254310IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDFRNQDEDI GMPSSLGYTN PPPIRGSAFS KPSSSSLVTP RGPGPGPGPG NRNGNIFGST  60
PPPPLNPPAD PPIPSHPLGK NPDPPAIPTA SPPSGSRPAS GSGKPPAIAT ESSVRYRECL  120
RNHAAAVGGH VVDGCGEFMP LGEAGTTDAL KCAACGCHRS FHRKDVDGDP SYYRGAAAAT  180
RLPLLLPPPH PQAHHHKPYP MAPFPPSPSQ AVPGSSSAVV AFGGNTSGSG GTTTESSSEE  240
RMNAGAPPPV VVSKKRFRTK FTVEQKEKML AFAERVGWRI HKQDEALVEQ FCAEAGVRRQ  300
VLKVWMHNNK HTIRRQQQQQ QQQQQQQQEE QQPLPPQHQQ QS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-292533121675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925945.10.0LOW QUALITY PROTEIN: zinc-finger homeodomain protein 6-like
SwissprotB8AX534e-64ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A2H3ZA121e-155A0A2H3ZA12_PHODC; zinc-finger homeodomain protein 6-like
STRINGXP_008810728.11e-156(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-29homeobox protein 22