PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010925744.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 330aa MW: 36685.5 Da PI: 6.5811 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.7 | 7.2e-12 | 194 | 219 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd CkF H+ XP_010925744.1 194 YQPDICKDYKETGYCGYGDACKFLHD 219 67789********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.27E-9 | 192 | 224 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-7 | 193 | 220 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 193 | 221 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-12 | 194 | 224 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 194 | 219 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 1.6E-13 | 264 | 312 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 3.81E-13 | 270 | 314 | No hit | No description |
Pfam | PF13920 | 9.7E-8 | 270 | 311 | No hit | No description |
PROSITE profile | PS50089 | 10.542 | 271 | 309 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 1.3E-4 | 271 | 308 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 4.64E-8 | 271 | 312 | No hit | No description |
PROSITE pattern | PS00518 | 0 | 286 | 295 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MADSGEVCNF FRKPIKNKNI RKRKAAESSD DDNDEEGSQP SSAVAQRSKK PVPADNKLHF 60 STARSSSKTY GDATGDDDDE GDEAAGGRAS ALFHFESSKE IQVQHDSLAT ATLETETEFS 120 KDARAIRERV LKQAEEALKG KSKGNDKVYR GIHGYTDYKA GFRREQTVAG EKAGGAHGPL 180 RPSSNIRLSA RFDYQPDICK DYKETGYCGY GDACKFLHDR GDYKSGWQLE KEWEEVEKAR 240 KRGLALGGGG TEGDGGDDED DDDDDSLPFA CFICRQPFEE PVVTKCKHYF CQHCALKHHA 300 TNKKCFVCNK PTLGIFNTAH EIRKKMAQEK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 1e-64 | 6 | 330 | 13 | 321 | RING finger protein 113A |
5z58_M | 1e-64 | 6 | 330 | 13 | 321 | RING finger protein 113A |
6ff4_t | 1e-64 | 6 | 330 | 13 | 321 | RING finger protein 113A |
6ff7_t | 1e-64 | 6 | 330 | 13 | 321 | RING finger protein 113A |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010925741.1 | 0.0 | zinc finger CCCH domain-containing protein 15 isoform X2 | ||||
Refseq | XP_010925742.1 | 0.0 | zinc finger CCCH domain-containing protein 15 isoform X3 | ||||
Refseq | XP_010925744.1 | 0.0 | zinc finger CCCH domain-containing protein 15 isoform X4 | ||||
Refseq | XP_029121331.1 | 0.0 | zinc finger CCCH domain-containing protein 15 isoform X5 | ||||
Refseq | XP_029121332.1 | 0.0 | zinc finger CCCH domain-containing protein 15 isoform X6 | ||||
Swissprot | Q8GX84 | 1e-146 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | A0A2H3XX23 | 0.0 | A0A2H3XX23_PHODC; zinc finger CCCH domain-containing protein 1 | ||||
STRING | XP_008789889.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-128 | C3H family protein |