PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925740.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 418aa    MW: 46776.3 Da    PI: 7.0999
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925740.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.39.7e-12194219126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd CkF H+
  XP_010925740.1 194 YQPDICKDYKETGYCGYGDACKFLHD 219
                     66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.45E-9192224IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7193220IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709193221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-12194224IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9194219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.107.7E-13264318IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.4E-7270311No hitNo description
SuperFamilySSF578506.18E-13270314No hitNo description
SMARTSM001841.3E-4271308IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.542271309IPR001841Zinc finger, RING-type
CDDcd001622.68E-7271312No hitNo description
PROSITE patternPS005180286295IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MADSGEVCNF FRKPIKNKNI RKRKAAESSD DDNDEEGSQP SSAVAQRSKK PVPADNKLHF  60
STARSSSKTY GDATGDDDDE GDEAAGGRAS ALFHFESSKE IQVQHDSLAT ATLETETEFS  120
KDARAIRERV LKQAEEALKG KSKGNDKVYR GIHGYTDYKA GFRREQTVAG EKAGGAHGPL  180
RPSSNIRLSA RFDYQPDICK DYKETGYCGY GDACKFLHDR GDYKSGWQLE KEWEEVEKAR  240
KRGLALGGGG TEGDGGDDED DDDDDSLPFA CFICRQPFEE PVVTKCKHYF CQHCALKHHA  300
TNKKCFVCNK PTLGIFNTAH EIRKKMAQEK YECRRPCILM RSGIWRLLWG CSKIWCSRLW  360
LGHPTQPIAR DVKVTCGDLI QSTPISTLAL ILYYVEHDFV AALQPPPRPT VQEDKNVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M8e-63633013321RING finger protein 113A
5z58_M8e-63633013321RING finger protein 113A
6ff4_t8e-63633013321RING finger protein 113A
6ff7_t8e-63633013321RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925740.10.0zinc finger CCCH domain-containing protein 15 isoform X1
SwissprotQ8GX841e-143C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A2H3XX230.0A0A2H3XX23_PHODC; zinc finger CCCH domain-containing protein 1
STRINGXP_008789889.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-126C3H family protein