PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925500.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 394aa    MW: 43052.6 Da    PI: 7.6579
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925500.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.93.9e-09139159526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G Ck+Gd C FaHg
  XP_010925500.1 139 ACPDFRK-GNCKRGDACEFAHG 159
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.4E-6134160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976135161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-6138161IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-7139159IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.343169193IPR000571Zinc finger, CCCH-type
SMARTSM0035612169192IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MMMMMVGERS HHNPTVHVPP WTPFDDPAPG VAYSLPVSGV AVAGGGDCSP YPLGEPSLAA  60
LQRFLPCNEI YAAGEDTDES EPADAPVDAY SCDEFRMYEF KVRRCARGRS HDWTECPYAH  120
PGEKARRRDP RKYHYSGTAC PDFRKGNCKR GDACEFAHGV FECWLHPARY RTQPCKDGTA  180
CRRRVCFFAH TPEQLRVLPQ QQQQQQLQQS PRTLAATDSY DGSPLRHQHT LEGYFSKNLM  240
SSSPTSTLIS PPISPPSESP PMSPRGVPAV RRASWPMNEL LTSLRHLQLS KVNAAPSSWG  300
YGMSGGAGFV SPRSGAGFGV GFCSLPSTPT RAALVGGGAG FVDEEEPVER VESGRALRAK  360
MFERLSKESI LGKAEVAPLA AQAPDVGWVS ELVK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925500.10.0zinc finger CCCH domain-containing protein 2
SwissprotQ9FU271e-128C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2H3Y6C60.0A0A2H3Y6C6_PHODC; zinc finger CCCH domain-containing protein 2-like
STRINGXP_008794080.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-110C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]