PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010925416.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GATA | ||||||||
Protein Properties | Length: 286aa MW: 31599.9 Da PI: 10.572 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.6 | 1.9e-19 | 160 | 193 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk + XP_010925416.1 160 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 193 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 4.09E-13 | 154 | 194 | No hit | No description |
SMART | SM00401 | 4.0E-20 | 154 | 205 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.466 | 158 | 190 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.3E-15 | 158 | 193 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.77E-12 | 159 | 187 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 160 | 185 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.7E-17 | 160 | 193 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MNRFSPIPLA EGGRGRDRRH LPPFAVASDT SSFSCSILFN TSQEQGANDG DHHLLQQKPD 60 DHLLISKSSD RLISFPTNNN NNTVEEPSHD RYVSQEDLHG PTKWMSSKMR FMRKMMNSGH 120 VIMSKRRTNM QILQDQGQSN QDGSTSNSSS NSPSGIIRVC SDCNTTKTPL WRSGPRGPKS 180 LCNACGIRQR KARRAMAAAA ASGGLIPSGA RGKMPKEKKS DVDRTIPFKK RCKNVHAIAT 240 TTQKKLCFDD VMISLSKSSA VHRVFPQDER DAALLLMALS WGIICS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010925416.1 | 0.0 | putative GATA transcription factor 22 | ||||
TrEMBL | A0A2H3Y4Y4 | 1e-145 | A0A2H3Y4Y4_PHODC; protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like | ||||
STRING | XP_008793253.1 | 1e-146 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 8e-27 | cytokinin-responsive gata factor 1 |