PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925357.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 306aa    MW: 34858 Da    PI: 4.3805
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925357.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1883137356
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t++q++ Le+ Fe  n+++  e++ +LA+ lg++ rqV +WFqNrRa++k
  XP_010925357.1  83 KKRRLTADQVQFLERNFELeNMKLEPERKVQLARDLGIQPRQVAIWFQNRRARWK 137
                     56689*************66**********************************9 PP
2HD-ZIP_I/II129.11.8e-4183173291
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     kkrrl+++qv++LE++Fe e+ kLeperKv+lar+Lg+qprqva+WFqnrRAR+ktkqlEkdyeaLk++ydal+++ ++L +e+e+L++++
  XP_010925357.1  83 KKRRLTADQVQFLERNFELENmKLEPERKVQLARDLGIQPRQVAIWFQNRRARWKTKQLEKDYEALKSSYDALTADYDNLLNEKEKLQAKV 173
                     9******************999******************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.08E-1774141IPR009057Homeodomain-like
PROSITE profilePS5007116.74678139IPR001356Homeobox domain
SMARTSM003892.4E-1581143IPR001356Homeobox domain
PfamPF000464.0E-1683137IPR001356Homeobox domain
CDDcd000862.87E-1783140No hitNo description
Gene3DG3DSA:1.10.10.604.5E-1888138IPR009057Homeodomain-like
PRINTSPR000311.7E-5110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000311.7E-5119135IPR000047Helix-turn-helix motif
PfamPF021839.0E-17139180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAGRSAYVSS NMAGLLQTGR ISSEAMEALL PPGPSHGEFH GSMPMMNFED VHGSRPEQAC  60
WGPFELEETG DEDLDEGVHQ PAKKRRLTAD QVQFLERNFE LENMKLEPER KVQLARDLGI  120
QPRQVAIWFQ NRRARWKTKQ LEKDYEALKS SYDALTADYD NLLNEKEKLQ AKVLSLTNML  180
LLKGKDVGSS EPIEFNKFAH QLGDLVSNSM CEMERVNAQV TECKQEDISS ANSTVFDSES  240
PHYIDEGAHS MLMEPMDSSN IFEPDRCDLL YAGEVDEVKG CSFLRLEDNL NNYEFPVEDQ  300
SCWFWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925357.10.0homeobox-leucine zipper protein HAT5
TrEMBLA0A2H3XP591e-177A0A2H3XP59_PHODC; homeobox-leucine zipper protein HAT5-like
STRINGXP_008786730.11e-155(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16055714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-43homeobox 1