PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010925243.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 307aa MW: 33706.1 Da PI: 8.9805 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.2 | 7.6e-10 | 80 | 104 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f G C+ G++C+FaHg XP_010925243.1 80 FKTRLCQKFKT-GSCPWGSNCNFAHG 104 79*********.*************8 PP | |||||||
2 | zf-CCCH | 24.8 | 3.8e-08 | 136 | 158 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++Cr f+ + C+yGdrC++ H+ XP_010925243.1 136 KICRKFYNGEVCPYGDRCTYLHV 158 79******66************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.04E-9 | 76 | 110 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.7E-17 | 78 | 112 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-5 | 79 | 105 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.91 | 79 | 106 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-7 | 80 | 104 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-9 | 132 | 161 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.2E-7 | 132 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.385 | 132 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-4 | 134 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-5 | 136 | 158 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 204 | 234 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 19 | 209 | 230 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MVTPPDQASA SFIPHPPLLL AAASSDDVIM LQPKNPADLA EFEAPPFKRP RNWDGVPLNP 60 LAAIPAPPNP PTRGTNYMFF KTRLCQKFKT GSCPWGSNCN FAHGIEELRQ PPPNWQELVA 120 GERVNGNDRQ RIHKNKICRK FYNGEVCPYG DRCTYLHVER ESSAMAVGSM PGPEKGGHGS 180 GLHNSDSTGG FRSAGDCNGS NQRLKVRIRY KWETTGHCSF GEKGIYAHSH AELKKSGGHG 240 ELDSAKIGAA PSKPLSNSTN DVPFIKTEST CMRQAQQKKS VFPNLAKKLS CIYADWIDDV 300 PLFSRTS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010925243.1 | 0.0 | zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A2H3XK80 | 0.0 | A0A2H3XK80_PHODC; zinc finger CCCH domain-containing protein 39-like | ||||
STRING | XP_008785025.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22934 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 4e-42 | C3H family protein |