PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925064.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 202aa    MW: 22793.1 Da    PI: 4.994
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925064.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.4e-1983136356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t++q+e Lee F+ ++++  e++ +LAk lgL+ rqV +WFqNrRa+ k
  XP_010925064.1  83 KKRRLTADQVELLEENFALDNKLELERKIQLAKDLGLQPRQVAIWFQNRRARLK 136
                     56689***********************************************98 PP
2HD-ZIP_I/II122.61.9e-3983172291
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     kkrrl+++qv+lLEe+F  ++kLe erK +la++Lglqprqva+WFqnrRAR ktkq+Ekdye+Lk++yd lk++ e+L +e+e+L++e+
  XP_010925064.1  83 KKRRLTADQVELLEENFALDNKLELERKIQLAKDLGLQPRQVAIWFQNRRARLKTKQMEKDYEVLKSSYDVLKADYENLLEEKEKLKAEV 172
                     9**************************************************************************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-1967140IPR009057Homeodomain-like
PROSITE profilePS5007116.87678138IPR001356Homeobox domain
SMARTSM003891.9E-1781142IPR001356Homeobox domain
CDDcd000861.09E-1683139No hitNo description
PfamPF000462.4E-1683136IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.7E-1985145IPR009057Homeodomain-like
PRINTSPR000316.5E-6109118IPR000047Helix-turn-helix motif
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PRINTSPR000316.5E-6118134IPR000047Helix-turn-helix motif
PfamPF021831.4E-15138172IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAGLMAYGGP NLAVLLRNEG FPSDATEALL ASDSSHGGFL GLKSMMNIEN AHGITNEGSF  60
YRSLDLDETG GVNLEEFCHQ PDKKRRLTAD QVELLEENFA LDNKLELERK IQLAKDLGLQ  120
PRQVAIWFQN RRARLKTKQM EKDYEVLKSS YDVLKADYEN LLEEKEKLKA EVFGCQVPLT  180
ALTTPHNAEP LCFLIMFNTL KI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARLKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925063.11e-120homeobox-leucine zipper protein HAT5
SwissprotQ022836e-37HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2H3Z4V03e-94A0A2H3Z4V0_PHODC; homeobox-leucine zipper protein HAT5-like isoform X1
STRINGXP_008808495.14e-95(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.18e-36homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]