PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925063.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 306aa    MW: 34671.3 Da    PI: 4.4838
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925063.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1883136356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t++q+e Lee F+ ++++  e++ +LAk lgL+ rqV +WFqNrRa+ k
  XP_010925063.1  83 KKRRLTADQVELLEENFALDNKLELERKIQLAKDLGLQPRQVAIWFQNRRARLK 136
                     56689***********************************************98 PP
2HD-ZIP_I/II120.39.8e-3983172291
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     kkrrl+++qv+lLEe+F  ++kLe erK +la++Lglqprqva+WFqnrRAR ktkq+Ekdye+Lk++yd lk++ e+L +e+e+L++e+
  XP_010925063.1  83 KKRRLTADQVELLEENFALDNKLELERKIQLAKDLGLQPRQVAIWFQNRRARLKTKQMEKDYEVLKSSYDVLKADYENLLEEKEKLKAEV 172
                     9**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-1868140IPR009057Homeodomain-like
PROSITE profilePS5007116.87678138IPR001356Homeobox domain
SMARTSM003891.9E-1781142IPR001356Homeobox domain
CDDcd000861.11E-1683139No hitNo description
PfamPF000465.0E-1683136IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-1885145IPR009057Homeodomain-like
PRINTSPR000311.2E-5109118IPR000047Helix-turn-helix motif
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5118134IPR000047Helix-turn-helix motif
PfamPF021831.1E-15138179IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAGLMAYGGP NLAVLLRNEG FPSDATEALL ASDSSHGGFL GLKSMMNIEN AHGITNEGSF  60
YRSLDLDETG GVNLEEFCHQ PDKKRRLTAD QVELLEENFA LDNKLELERK IQLAKDLGLQ  120
PRQVAIWFQN RRARLKTKQM EKDYEVLKSS YDVLKADYEN LLEEKEKLKA EVLFLTDKLC  180
KWEKGDLETH KIKNSPPLLL QKLDMDSVFE ENKPDVHVLL CKLEDLNSAN SPVSDSDSLG  240
YTDGVLSPIL EPADSSSVFK PDRALLLHVN EDEEIKGCSS MKLEDNSFNY VFPVEDQAFW  300
LWPWPC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARLKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925063.10.0homeobox-leucine zipper protein HAT5
TrEMBLA0A2H3Z4V01e-176A0A2H3Z4V0_PHODC; homeobox-leucine zipper protein HAT5-like isoform X1
STRINGXP_008808495.11e-177(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16055714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-34homeobox 1