PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925019.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 286aa    MW: 31666.4 Da    PI: 10.2383
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925019.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.52.2e-19163197135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs C ttkTplWR+gp+g+k+LCnaCG+++rk ++
  XP_010925019.1 163 CSDCSTTKTPLWRSGPQGPKSLCNACGIRQRKARQ 197
                     ********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.3E-20157209IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.38E-13157199No hitNo description
Gene3DG3DSA:3.30.50.105.2E-16161196IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.532161193IPR000679Zinc finger, GATA-type
CDDcd002029.75E-14162206No hitNo description
PfamPF003204.1E-17163197IPR000679Zinc finger, GATA-type
PROSITE patternPS003440163188IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MFPSNLNQSS LPLKKRNQDQ SHLSTSTPAT NYNLYPVFFE YTIEDQGAND GSKRHGHQYH  60
QQQQQEKPNE SLLINGSNDF LQSFSANRKN NNDKMDQYFC GGAHNEDGHG SVKWMSSKMQ  120
RMRKMMGSEQ TVTSKPRRSS GQEKKQQNQD SSSNFPSGII RVCSDCSTTK TPLWRSGPQG  180
PKSLCNACGI RQRKARQAMS AAAGSGLIAT NTLSKVRKGK RTDGDHTIPN KKRCKITNTG  240
SAQKKLQIND LLISLSDDSA SHRVFPQDEK DAAILLMALS CGAVHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925019.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A2H3YF041e-136A0A2H3YF04_PHODC; putative GATA transcription factor 22
STRINGXP_008797761.13e-86(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.17e-25cytokinin-responsive gata factor 1