PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010924919.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 251aa MW: 27999.3 Da PI: 8.71 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.9e-19 | 95 | 148 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++keq + Lee F++n++++ +++e LA+kl+L rqV vWFqNrRa+ k XP_010924919.1 95 KKLRLSKEQSRLLEESFRQNHTLNPKQKEALAMKLKLRPRQVEVWFQNRRARTK 148 67789***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122.5 | 2.1e-39 | 95 | 182 | 2 | 90 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 kk+rlskeq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++eveeLr + XP_010924919.1 95 KKLRLSKEQSRLLEESFRQNHTLNPKQKEALAMKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELR-A 182 9*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-18 | 81 | 148 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.72E-19 | 86 | 151 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.151 | 90 | 150 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-16 | 92 | 154 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.83E-15 | 93 | 151 | No hit | No description |
Pfam | PF00046 | 2.6E-16 | 95 | 148 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 125 | 148 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 7.1E-10 | 150 | 183 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 8.9E-23 | 150 | 193 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MVLFFLIVKV FDLFVLLFFL LCALEFFRMG DFRGSPSGLE LTIAVPGLSS SSGSEGGGCN 60 MRELDINLPA SGAEEEFPMG SLEEEEEEGG TPRPKKLRLS KEQSRLLEES FRQNHTLNPK 120 QKEALAMKLK LRPRQVEVWF QNRRARTKLK QTEMECEYLK RCFGSLTEEN RRLQREVEEL 180 RALRVAPPTI LSPHTRQPMP ASALTMCPRC ERLTSTPRAA ATSAAAAAAT ARLPSASPFL 240 SRGHHSSSAA C |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 150 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010924919.1 | 0.0 | homeobox-leucine zipper protein HOX3 isoform X1 | ||||
Swissprot | Q0JKX1 | 1e-101 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 1e-101 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A2H3WXR4 | 1e-124 | A0A2H3WXR4_PHODC; homeobox-leucine zipper protein HOX3-like | ||||
STRING | XP_008775283.1 | 1e-125 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6826 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 6e-58 | homeobox-leucine zipper protein 17 |