PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924500.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 329aa    MW: 36619.2 Da    PI: 10.1033
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924500.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.2e-19897198
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    ffkv      l+s+ l +p  f  ++ +  +e + t++l+ +sg +W+v++   k+s++ ++++GWk+Fv ++ ++ gDf+vF++dg   f   v v
  XP_010924500.1  8 FFKVY--FPELSSDHLKIPPAFR-KYiE--HELPGTVSLKGPSGGTWNVEF--VKSSKGLLFANGWKKFVADHSIELGDFLVFRYDGGLHF--SVLV 95
                    55666..34567778******97.5525..458889***************..*******************************9985555..6666 PP

                    E- CS
              B3 97 fr 98
                    ++
  XP_010924500.1 96 LD 97
                    65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.61E-252101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-233101IPR015300DNA-binding pseudobarrel domain
CDDcd100172.05E-20697No hitNo description
PROSITE profilePS5086314.311699IPR003340B3 DNA binding domain
SMARTSM010195.8E-15899IPR003340B3 DNA binding domain
PfamPF023625.1E-16895IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0034613Biological Processcellular protein localization
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MERSSPHFFK VYFPELSSDH LKIPPAFRKY IEHELPGTVS LKGPSGGTWN VEFVKSSKGL  60
LFANGWKKFV ADHSIELGDF LVFRYDGGLH FSVLVLDATA CEKEAAFLAR PYGGGHIAIV  120
DGIEGGEEGE TMGEHDSKAL VLSPNESFGV GHMRNICSVD CLAMQGPPSK TEKRKKGSPS  180
DEVAAISQDD LDSWKLRKSK SKTPARISPP SGALAVPHKK VHENTMREKD LHKRKIVSSE  240
HTMAVNKAKT KLQRGRLVAK VQRMPSLISQ RRPVTKEEIN KALEQAKSFK SKSPFVRVVM  300
RDSYVYVSFF MVFSYDVMAT KFFPIATST
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00192DAPTransfer from AT1G49480Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924483.10.0B3 domain-containing protein Os11g0197600 isoform X8
RefseqXP_019703814.10.0B3 domain-containing protein Os11g0197600 isoform X8
TrEMBLA0A3Q0HZ761e-179A0A3Q0HZ76_PHODC; B3 domain-containing protein Os11g0197600-like isoform X4
STRINGXP_008787667.11e-171(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.16e-19B3 family protein