PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924277.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 264aa    MW: 28075.2 Da    PI: 7.9651
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924277.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.32.9e-20135169135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  XP_010924277.1 135 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 169
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.5E-20129182IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.969132165IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.09E-14132174No hitNo description
Gene3DG3DSA:3.30.50.102.4E-17133169IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.14E-13134166No hitNo description
PfamPF003206.2E-18135169IPR000679Zinc finger, GATA-type
PROSITE patternPS003440135160IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MLHQCGHHSG GGISTPCSCG LLYGACGASG STSFSILFPG KQSAMDEVFD SGYPIPSPSS  60
VDCTLSLGTP STRRTESHKP PPTSTPIQQP SCVSSLCWDI LSPSSKQPSV ASHGPTGPTN  120
CSNLGADPVL LARRCANCDT TSTPLWRNGP RGPKSLCNAC GIRYKKEERR AAASTASPTS  180
SSVVSATAEQ TGIGYGYPRQ QQQQQQHQAW SCYNSTVTAS KSPSISTYDD VMDGEEVSYL  240
SWRLNVVPSA QFPVRDRPSL FQYN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924277.10.0GATA transcription factor 19
TrEMBLA0A2H3YM871e-159A0A2H3YM87_PHODC; GATA transcription factor 19
STRINGXP_008800719.11e-160(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.14e-32GATA family protein