PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924268.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 198aa    MW: 22753.2 Da    PI: 5.3649
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924268.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-172269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+++++ +G g W+  ar  g++Rt+k+c++rw++yl
   XP_010924268.1 22 KGPWTMEEDLILINYIANHGEGVWNNLARSAGLNRTGKSCRLRWLNYL 69
                     79********************************************97 PP
2Myb_DNA-binding53.45.9e-1775118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ ++++++G++ W++Iar ++ gRt++++k++w++
   XP_010924268.1  75 RGNITPEEQLLIMELHARWGNR-WSKIARQLP-GRTDNEIKNYWRT 118
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-241472IPR009057Homeodomain-like
PROSITE profilePS5129415.6681769IPR017930Myb domain
SuperFamilySSF466892.36E-3020116IPR009057Homeodomain-like
SMARTSM007174.2E-132171IPR001005SANT/Myb domain
PfamPF002493.3E-162269IPR001005SANT/Myb domain
CDDcd001673.24E-102469No hitNo description
PROSITE profilePS5129425.45270124IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2473125IPR009057Homeodomain-like
SMARTSM007174.7E-1474122IPR001005SANT/Myb domain
PfamPF002492.9E-1575118IPR001005SANT/Myb domain
CDDcd001677.10E-1179118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MVEEANSMDK GINCSEEAEV RKGPWTMEED LILINYIANH GEGVWNNLAR SAGLNRTGKS  60
CRLRWLNYLR PDVRRGNITP EEQLLIMELH ARWGNRWSKI ARQLPGRTDN EIKNYWRTRI  120
QKKVKHGESS DYQHAMLIDE ASTTTSQTNS VEDGGAQPSY TQQRETNPVA LAPPFSTESC  180
DNFWSVEDFW SMQSFNGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-271912424128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924268.11e-148myb-related protein 305
SwissprotP813915e-85MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A2H3YLY21e-133A0A2H3YLY2_PHODC; myb-related protein 305-like
STRINGXP_008800726.11e-133(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.13e-79myb domain protein 24
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]