PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924194.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 221aa    MW: 24523 Da    PI: 8.9374
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924194.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.9e-1966119356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+ +++keq + Lee F++n++++ +++e LA+kl+L  rqV vWFqNrRa+ k
  XP_010924194.1  66 KKLRLSKEQSRLLEESFRQNHTLNPKQKEALAMKLKLRPRQVEVWFQNRRARTK 119
                     67789***********************************************98 PP
2HD-ZIP_I/II122.91.6e-3966153290
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     kk+rlskeq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++eveeLr +
  XP_010924194.1  66 KKLRLSKEQSRLLEESFRQNHTLNPKQKEALAMKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELR-A 153
                     9*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-1852119IPR009057Homeodomain-like
SuperFamilySSF466891.3E-1953122IPR009057Homeodomain-like
PROSITE profilePS5007117.15161121IPR001356Homeobox domain
SMARTSM003892.9E-1663125IPR001356Homeobox domain
CDDcd000867.20E-1664122No hitNo description
PfamPF000462.1E-1666119IPR001356Homeobox domain
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
SMARTSM003408.9E-23121164IPR003106Leucine zipper, homeobox-associated
PfamPF021835.9E-10121154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAGFGGSPSG LELTIAVPGL RTSTGFEGGG CNVRELDINQ PACGAEEDFP MGSVEEEEDG  60
GTPRPKKLRL SKEQSRLLEE SFRQNHTLNP KQKEALAMKL KLRPRQVEVW FQNRRARTKL  120
KQTEMECEYL KRCFGSLTEE NRRLQREVEE LRALRVAPPT ILSPHTRQPM PASALTMCPR  180
CERLTSTPRP VAASAAATTT TSSLPSAFPF HPRHHPSSAA C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924194.11e-161LOW QUALITY PROTEIN: homeobox-leucine zipper protein HOX3
SwissprotQ0JKX11e-100HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH381e-100HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2H3ZUT21e-135A0A2H3ZUT2_PHODC; homeobox-leucine zipper protein HOX3
STRINGXP_008800935.11e-132(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.11e-67homeobox-leucine zipper protein 17