PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924174.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 353aa    MW: 39021.8 Da    PI: 7.5465
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924174.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.31.2e-13278303126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ + ++G+C+yG+ C+FaHg
  XP_010924174.1 278 FKTELCNKWEENGECPYGEHCQFAHG 303
                     79***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.5E-18272310IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-10274309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065277305IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-9277304IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-11278303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-11311341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-8312342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.122315343IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5315342IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MQQELVTHAN GEQLRSALGS ASFRSPDQRL SSPPYFANSG DFCWPYTSVI SPTEGTPTGV  60
TPLPGSGSVS LTPSTVSFDE EDPAATENRL YLARLTLQYQ EIAERYQLCL SHLQDAAQEA  120
EALRQENAKL RIANGELAKR LSLLSEKQSH RIASFAASGH PALSIVDEFR RLGVGDPPAE  180
TSPTSVLAFQ ENRFARRAAE KRVLMPKSIS VRSSGYLKLN QAIPAANRNG RLRASSPVMV  240
GSQRVYVGGG SKKKLERGGE DEEGGEALEL EVYNQGMFKT ELCNKWEENG ECPYGEHCQF  300
AHGVGELRPV IRHPRYKTEV CRMILTGDTC PYGHRCHFRH TLSPSDRFFL HPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-21278340466Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924174.10.0zinc finger CCCH domain-containing protein 9
SwissprotQ6L5G13e-93C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A3Q0I9M71e-150A0A3Q0I9M7_PHODC; zinc finger CCCH domain-containing protein 9-like isoform X2
STRINGXP_008800937.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-63C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]