PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924067.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 298aa    MW: 32750.2 Da    PI: 10.2098
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924067.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1661.3e-51121371128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+v+yL++kv++++++l  +i e+d+yk++Pw Lp k+  +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk + + 
  XP_010924067.1  12 LPPGFRFHPTDEELLVHYLCRKVSHEPFSL-PIIGEIDLYKFDPWVLPGKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVISV- 104
                     79**************************99.88***************8777899***********************************9999. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +g+  g+kk Lvfy grapkg+kt+W+mheyrl
  XP_010924067.1 105 GGRRLGIKKALVFYVGRAPKGSKTNWIMHEYRL 137
                     999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-655173IPR003441NAC domain
PROSITE profilePS5100559.11712173IPR003441NAC domain
PfamPF023655.4E-2713137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGSREMASQL GLPPGFRFHP TDEELLVHYL CRKVSHEPFS LPIIGEIDLY KFDPWVLPGK  60
ALFGEKEWYF FSPRDRKYPN GSRPNRVAGS GYWKATGTDK VISVGGRRLG IKKALVFYVG  120
RAPKGSKTNW IMHEYRLCDA APSDSTKGQP TASATMPRPR RLDQWVLCRI YKKSYGVQHQ  180
KTSALNSRGQ TTHVAAAPLT HAGLHCYQSK LDQLIAKPIM DSYRSHCLQD STAVPPLCRV  240
KSPSKVLGGS CVDEEXFLLP ASAPAAATAT ASAASRKSKP GRYRGDGAGD PSTPSPTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-8611787173NAC domain-containing protein 19
3swm_B3e-8611787173NAC domain-containing protein 19
3swm_C3e-8611787173NAC domain-containing protein 19
3swm_D3e-8611787173NAC domain-containing protein 19
3swp_A3e-8611787173NAC domain-containing protein 19
3swp_B3e-8611787173NAC domain-containing protein 19
3swp_C3e-8611787173NAC domain-containing protein 19
3swp_D3e-8611787173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00360DAPTransfer from AT3G15500Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924067.30.0LOW QUALITY PROTEIN: NAC domain-containing protein 72
SwissprotA0A3Q7HH646e-90JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBLA0A2H3ZK211e-167A0A2H3ZK21_PHODC; NAC domain-containing protein 72
STRINGXP_008800136.11e-167(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53893761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.13e-89NAC domain containing protein 3
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]