PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010923916.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C3H | ||||||||
Protein Properties | Length: 985aa MW: 110621 Da PI: 7.229 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.5 | 9.7e-08 | 436 | 456 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C++fa+ G+C++G+ CkF+H XP_010923916.1 436 APCKYFAK-GHCRHGEDCKFSH 456 69******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 363 | 395 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.624 | 370 | 397 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.6E-4 | 370 | 396 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.868 | 432 | 459 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.3E-4 | 434 | 458 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-6 | 435 | 457 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-5 | 436 | 456 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 437 | 457 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 985 aa Download sequence Send to blast |
MAENFRRRKS RWEMAETHFP NKVRKDNALP VKAVLSHDKE SKSSRSSFKY NHNQFSKWSD 60 MEGSNAPIHG DDFEARQLAT WSKRPKSPKW SDMESDHKGS KNSSWQPLSG SQSARGDDNI 120 SRDTAGWGTT VDQTNPDAWK QHKEGLKNSS LEPVSGIQST RGDDNVRRDT AGWGTALDQI 180 GPDAWKQCKE SLKDSSSEPV SGSHSARADD NVRRDAAGWG TVLDQTGPDA WRQHNHSVSP 240 DNVWNRSRRS RSRSPFKGLR HESESWNDRS RKGGRSAAPC RDFVADRHRT GGQFRYLREV 300 GSPRHSGRYH DNDATEIRKI RSERGRYSVH DNKEDIRDSL DQSNYSRNRF SRRHGNDSGG 360 EERHEVYKTS RSAGLCHDFA RGRCNRGSMC RYLHHDASSG GGPFRKDYPW ERTFDRRDVD 420 ASSFRQSVEP CRVTDAPCKY FAKGHCRHGE DCKFSHQVLP KAHSKERRDD DRWNTGLESE 480 RSPVWNGPKW GDETAPSWNG PKWGDESATS WDGPKWGDQA ATSQNDSKWG DVANMHAPNS 540 FQWMSDSNGA GDAASYSIGI EDYPIKSHHP PSTEPEKNNH QSLPKEVIEK ALPSHGQNMT 600 WEVPGKDQNV PSVTTETVVE GTCVQWHPGI MEEVLCGDGE ESENVHANSV KSQAAMKYSA 660 NNLQTVVSVH DQCFGESSQS HHLAPEPPDA QTITQNEQHQ QVLPQVPSNT NLTGQNQLCL 720 LPHNGQSQNL AEQSQHYLSV SPHVSPSEQV DSSNGQNHNS PILPPSAQPN QVSVSEQQCP 780 TSDGMRSVTP DPDSLLPVFT PISVEIKDPS TETLRETLNN SFSLPITDGP NEGNLNNTAD 840 LEEKLHSGKQ ESKHIEQDGD DNKKVSETEI GQRKKEEQIA QSKGVNAYAH IDGEGKRSRD 900 DKGVRMFKFA LVEHVKDMLK PTWKEGRLTK EVHKTIVKKV VEKVTSTLQD PTIPWTQERI 960 DVYLSCSKVK LNKLVQAYVQ KYGKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010923915.1 | 0.0 | zinc finger CCCH domain-containing protein 55 isoform X1 | ||||
Refseq | XP_010923916.1 | 0.0 | zinc finger CCCH domain-containing protein 55 isoform X1 | ||||
Refseq | XP_029120925.1 | 0.0 | zinc finger CCCH domain-containing protein 55 isoform X1 | ||||
Refseq | XP_029120926.1 | 0.0 | zinc finger CCCH domain-containing protein 55 isoform X1 | ||||
TrEMBL | A0A2H3YTF9 | 0.0 | A0A2H3YTF9_PHODC; zinc finger CCCH domain-containing protein 55-like | ||||
STRING | XP_008803631.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 1e-13 | C3H family protein |