PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010923739.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 297aa MW: 34432.8 Da PI: 8.9274 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.3 | 1.8e-50 | 22 | 149 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 pGfrFhPtdeelv +yL++kve+k+l++ e+ik++diyk++PwdLp ++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s+ XP_010923739.1 22 LPGFRFHPTDEELVGFYLRRKVEKKPLRT-EIIKQIDIYKYDPWDLPISTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIHSTg 115 59*************************99.89***************76667899**************************************86 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 g +glkk+Lv+y+g+a kg+ktdW+mhe+rl XP_010923739.1 116 dAGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 149 66667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-54 | 21 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.787 | 21 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-25 | 23 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MDNRSKGEQK VVLEGEEEDV ALPGFRFHPT DEELVGFYLR RKVEKKPLRT EIIKQIDIYK 60 YDPWDLPIST VGGEKEWYFF CLRGRKYRNS IRPNRVTGSG FWKATGIDRP IHSTGDAGDC 120 IGLKKSLVYY RGSAGKGTKT DWMMHEFRLP ATDKNNDNSP RLQEAEIWTI CRIFKRNVSY 180 KKYQQGWKAS ASKQMSTESS SKTSSFESDT GDEYKHLGSS GILRGEMKLI TNYYEEENQM 240 LPSQWNPMVQ APLTTWRPNI PNPSTNDQFF KDGNWDELGR IMEFMTDTNK AHLGRYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-49 | 23 | 182 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-49 | 23 | 182 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-49 | 23 | 182 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-49 | 23 | 182 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-49 | 23 | 182 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-49 | 23 | 182 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-49 | 23 | 182 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-49 | 23 | 182 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-49 | 23 | 182 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-49 | 23 | 182 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-49 | 23 | 182 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-49 | 23 | 182 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-49 | 23 | 182 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-49 | 23 | 182 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010923739.1 | 0.0 | transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 7e-87 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A2H3XQN7 | 0.0 | A0A2H3XQN7_PHODC; transcription factor JUNGBRUNNEN 1-like | ||||
STRING | XP_008787325.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-86 | NAC domain containing protein 42 |