PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923648.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 500aa    MW: 55000.8 Da    PI: 6.177
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923648.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0004931123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C ksF++  +L  H+r+H
  XP_010923648.1  9 HRCKVCRKSFPSGRSLGGHMRSH 31
                    79********************8 PP
2zf-C2H215.83.9e-058099221
                    EETTTTEEESSHHHHHHHHH CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                    +C  Cgk+F+++  L  H+r
  XP_010923648.1 80 QCRECGKVFPSWRALFGHMR 99
                    7******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.785931IPR007087Zinc finger, C2H2
PfamPF139126.7E-9931IPR007087Zinc finger, C2H2
SuperFamilySSF576672.74E-9931No hitNo description
SMARTSM003550.0055931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801133IPR007087Zinc finger, C2H2
SuperFamilySSF576672.74E-974101No hitNo description
PROSITE profilePS5015710.03479102IPR007087Zinc finger, C2H2
SMARTSM003550.001779101IPR015880Zinc finger, C2H2-like
PfamPF139123.8E-780103IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
PfamPF139121.3E-11338361IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.533338365IPR007087Zinc finger, C2H2
SuperFamilySSF576675.77E-8338360No hitNo description
SMARTSM003550.051338360IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280340360IPR007087Zinc finger, C2H2
SuperFamilySSF576675.77E-8402429No hitNo description
PfamPF139121.1E-9407429IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.325407429IPR007087Zinc finger, C2H2
SMARTSM003550.3407429IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280409429IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MEGEKLLKHR CKVCRKSFPS GRSLGGHMRS HFHTAVAGSS ENNAEERPPA SIRGASYGLR  60
EKPKKTWRMS DYTSDDGEKQ CRECGKVFPS WRALFGHMRC HSERVCRTSE EQEEQEGSWS  120
NGGRSESEAA VMAVPRRRRG SRRMVAVITA SSSSLSEYER EEEDGAISLM MLSRDVWYCG  180
GGGGSGRGVG GGIHSLTESS DKNSAVFEER GIDEGDGDVV PRNGGCWRNG LKRVESDASD  240
DWFDRDNEFK KPKVCNSDAD ELQDSDEESK KDSSKKKDLN SAAAELGLKP RFDGSEFKIE  300
KQRFDDSDAK FGIDSIERSR SDASDGGLDK AAKRRSQFEC STCNKTFHSY QALGGHRASH  360
KRMKGCYGSE NSLETDASVD LPAVEEMVDQ GEGIEAANGL SKKAKGHECL LCGKVFSSGQ  420
ALGGHKRAHL VMNTDDRGDA ACRQTIMIQQ QPLEMPDLLD LNLPAPVDEE FNSTNGNAEM  480
KSWWAGSNVK HEPLVGVISN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923648.10.0zinc finger protein ZAT4
TrEMBLA0A2H3XN050.0A0A2H3XN05_PHODC; uncharacterized protein LOC103704576
STRINGXP_008786152.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1719549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-25C2H2-like zinc finger protein