PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923439.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 736aa    MW: 78479.4 Da    PI: 6.6224
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923439.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07313333526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  XP_010923439.1 313 PCPDFRK-GACRRGDMCEYAHG 333
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.51E-1583168IPR020683Ankyrin repeat-containing domain
PfamPF127966.0E-1085157IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.06989192IPR020683Ankyrin repeat-containing domain
CDDcd002049.98E-1389167No hitNo description
SMARTSM002480.003689119IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.203.2E-1690168IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.102124159IPR002110Ankyrin repeat
SMARTSM002480.0063124156IPR002110Ankyrin repeat
SMARTSM003564.0E-6308334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4312335IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-5313333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582313335IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.38343367IPR000571Zinc finger, CCCH-type
SMARTSM0035670343366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MCGGPERLKP SPSPSTSTSQ HNFNNSSSDL SXMKHLTIET GDNFSSLLEL AANNDADGFK  60
RSVEEEPSAI DEIGLWYGRK KGSNRMVLEH RTPLMVAATY GSIEVLRLIL SLSSVDVNRC  120
CGPDKTTALH CAASSGSANA VEAVKLLLSA GADADLVDAS GHRPADVIAV PPKLSEFKLA  180
LEDLLGVSAG DPRCALRVST SPSISSSPPL SLSPVEGGSP SSDDSSASPT AGKFHDHPPA  240
SPAPSEKKEY PVDPSLPDIK NSIYATDEFR MFSFKIRPCS RAYSHDWTEC PFVHPGENAR  300
RRDPRKYHYS CVPCPDFRKG ACRRGDMCEY AHGVFECWLH PAQYRTRLCK DGPGCTRRVC  360
FFAHTHEELR PLYVSTGSTV PSPRSSASTA MEMAAAMSLL PGSPSSVMSP TPFTPPMSPS  420
ANGGGHSSLA WPQPNVPVLH LPGSNLQSSR LRTSLSARDM AVDELLMLSE LEAPQHQLND  480
LYFPSGPARL GSPLAGNRSV RSKALAPSNL DDLFSTEISL SPRYNSEQGA VFSPTHKSAV  540
LNQFQQQQSL LSPIKTNNVF SPKAVDSQQA LLQASLGVSS SGRMSPRGLE PVSPVSSRIA  600
ALTQREKLQQ QLRSLGSSNN GVPSMAGSPG NSSWSKWGSP SGKVDWGVNG DELGRYKSSS  660
SVELGGSGGE EPDVSWVHSL VSPPELKDKH ETNTSTSNGG GSAADAATNS STQLDGSDHT  720
VLGAWLEQMQ LDQLVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923439.20.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2H3XMV70.0A0A2H3XMV7_PHODC; zinc finger CCCH domain-containing protein 24-like
STRINGXP_008786132.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]