PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010923015.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 1303aa    MW: 142661 Da    PI: 8.1913
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010923015.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.84.6e-339711028260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60  
                      +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g Hnh+k
  XP_010923015.1  971 EDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSL-DGQITEIVYKGAHNHPK 1028
                      7****************************************.***************85 PP
2WRKY103.41.2e-3211321190159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59  
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+a+d ++v++tYeg+Hnh+
  XP_010923015.1 1132 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERAAHDLRAVITTYEGKHNHD 1190
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813833.05E-54388IPR001810F-box domain
Gene3DG3DSA:3.80.10.102.4E-3845315IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520471.12E-31100310No hitNo description
SMARTSM0036789109134IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM0036745136161IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM003670.018187212IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM003670.11213238IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM00367160239263IPR006553Leucine-rich repeat, cysteine-containing subtype
SuperFamilySSF520473.66E-41321633No hitNo description
Gene3DG3DSA:3.80.10.102.8E-7336434IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00367170340364IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM003670.0089365390IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM003673.2391416IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM003670.7417442IPR006553Leucine-rich repeat, cysteine-containing subtype
Gene3DG3DSA:3.80.10.105.3E-41435656IPR032675Leucine-rich repeat domain, L domain-like
PfamPF135160.03443464IPR001611Leucine-rich repeat
SMARTSM003670.72467492IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM003670.0011493518IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM003670.011519544IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM0036730545569IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM003670.044570595IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM003670.098596620IPR006553Leucine-rich repeat, cysteine-containing subtype
PfamPF135160.035596618IPR001611Leucine-rich repeat
Gene3DG3DSA:2.20.25.805.9E-299581029IPR003657WRKY domain
SuperFamilySSF1182907.19E-259681029IPR003657WRKY domain
SMARTSM007749.2E-379701028IPR003657WRKY domain
PROSITE profilePS5081123.4339711029IPR003657WRKY domain
PfamPF031066.8E-259711027IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-3611171192IPR003657WRKY domain
SuperFamilySSF1182901.16E-2811241192IPR003657WRKY domain
PROSITE profilePS5081138.15911271192IPR003657WRKY domain
SMARTSM007742.2E-3811321191IPR003657WRKY domain
PfamPF031067.9E-2511331190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1303 aa     Download sequence    Send to blast
MEAIGRSSWS PGALPTLTFD LVSKNSNPYN RLNPRPIKKM RGEAEQQRNP FDSLTEEILF  60
LILDRLGSNP VDKKSFSLVC KSFYAAESRH RRTLAPLRSD LLRRILARYP SIARLDFTLC  120
PRVTDGALAA AADALRSSLR SVDLSRSKAF SSVGLEKLAV NCTSLVEIDL SYSFYLNDGA  180
AAAIGRARNL ERLWLAKCRR ITDIGIARIA LGCPKLRLLC LNECIKLTDL GIELVASKCK  240
MLQSLDLSYL AITEKCLPAI LQLPYLEDLS LPECVGVDAL SQGCTSLEVL DMSIRQQVFD  300
IATCQHAKCA GLSSITNRSL GLRQMGLTYY IPVTCFLQKL PRLQSIKLSD CEITSTELKA  360
IGTSCLSLKE LSFSKCSGIT DEDLSFIVSK HRDLLKLDIT CCSEITDVSL ANITSSCTSL  420
TSLRMESCNL VSKEGFRLIG QRCHLLEELD LTDTDLDNEG LKAVSGCFKL SSLKIGLCMN  480
INDEGLVHVG KCCPKLQVLD LYRCTGITDM GISAIGLGCP VLRMINLAYC SDITDDSLRS  540
LSKCLNLDTL EIRGCPQVSS VGISAIAVGC RQLTKLDVKK CYDINDDGML SLGRFSQNLR  600
QINLSYCSVT DRGLLALASI SCLQNMTILH LKGLTPNGLK NVLWACNGLR KMKLHSSLKS  660
LIPQHILEYT QARGCMFQWS NKPYQAELVP NEIWKQQSRV PYYQSPTLPS LSLNHTNSLS  720
SSLFISFFWS LLLMASSTGS LETSADSQPA AFSFSFPTST SFSELLQGAG NDGGEGRSMT  780
GASRGFSGTM ANSGGVGPKF KSITPPSLPI SPPPISPSSY FAIPSGLSPT DFLDSPVLLS  840
SNILQSPTTG SFSTQTLNWR GPAADYQQGV KQENKAYSEF SFQTQASNGT MQTSSFYPSS  900
MAISLDQQSL NYQQHSNNAY AKSELMAPTR TNSSGIPTSQ ASTQVNNGGY QSNVSHSSQA  960
AQTLRAQRRS EDGYNWRKYG QKQVKGSENP RSYYKCTFPN CPTKKKVERS LDGQITEIVY  1020
KGAHNHPKPQ PTRRNSASSQ AIQASGAAEA GPFGAQSGIL IDAVHTPENS SASFGDDDVD  1080
ISKSGADEFD EDEPDAKRWR KEGENEGISA SGNRTVREPR VVVQTTSDID ILDDGYRWRK  1140
YGQKVVKGNP NPRSYYKCTT VGCPVRKHVE RAAHDLRAVI TTYEGKHNHD VPAARGSGGS  1200
RPSTDNNNFT MAIKPSAMVN HPNQIAAAAF FSNRPSASAS QAPFTLEMMQ ASGGNIGFSG  1260
FDNSMNSYMN QQQQQQQQRR MEGVFSQTKE EPRDDLFLDS FLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-379551193278Probable WRKY transcription factor 4
2lex_A5e-379551193278Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019706567.10.0F-box/LRR-repeat protein 3
SwissprotQ8RWU50.0FBL3_ARATH; F-box/LRR-repeat protein 3
TrEMBLA0A2H3ZV890.0A0A2H3ZV89_PHODC; F-box/LRR-repeat protein 3
STRINGXP_008799869.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP431722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-117WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Callis J,Vierstra RD
    Protein degradation in signaling.
    Curr. Opin. Plant Biol., 2000. 3(5): p. 381-6
    [PMID:11019805]
  2. Xiao W,Jang J
    F-box proteins in Arabidopsis.
    Trends Plant Sci., 2000. 5(11): p. 454-7
    [PMID:11077244]