PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922900.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 337aa    MW: 38120.8 Da    PI: 6.9359
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922900.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.86.1e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +v+++G+g+Wk++a   g+ R+ k+c++rw +yl
   XP_010922900.1 14 KGPWTPEEDIILVSYVQEHGPGNWKSVATNTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding46.11.1e-1467112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E+  ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
   XP_010922900.1  67 RGNFTPHEEGMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-24564IPR009057Homeodomain-like
PROSITE profilePS5129427.127965IPR017930Myb domain
SuperFamilySSF466892.58E-3111108IPR009057Homeodomain-like
SMARTSM007176.7E-151363IPR001005SANT/Myb domain
PfamPF002491.4E-171461IPR001005SANT/Myb domain
CDDcd001671.77E-121661No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2465117IPR009057Homeodomain-like
SMARTSM007171.2E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129419.01566116IPR017930Myb domain
PfamPF002495.0E-1367112IPR001005SANT/Myb domain
CDDcd001671.74E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRPPCCDKI NIKKGPWTPE EDIILVSYVQ EHGPGNWKSV ATNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TPHEEGMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKIKKYQ  120
TTIGSYMTPS DSTITCHELI SRSYRDETRN SDISTIHSLL PRSSHNSSTY ASSTENISRL  180
LEGWMRSSSK ADLKLAQDKQ HQSIDAFKIS SNAAFNQAYF EVGQVKSDRE CGDPIPQAHI  240
EGGQVMDDQE HCGRIPHEEV ESFLSFENSS GISWEKSCVN STFYRPQSMV ADAEAKQRPD  300
SGRHPLSLLE KWLLEEATGQ VDLMELSADG CSDVMFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922900.10.0transcription factor MYB60
SwissprotB3VTV71e-110MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A2H3Y2N10.0A0A2H3Y2N1_PHODC; myb-related protein 306
STRINGXP_008792495.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.18e-90myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]