PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922799.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 279aa    MW: 32110.1 Da    PI: 8.6718
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922799.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18133221197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v++  +l lp kf++e+   +  ++ ++lede+g +++  +   +++ +  l++GW+ F+ +++L++gD +vF+l++ ++f  +v 
  XP_010922799.1 133 FVKSMLRSHVSSCFWLGLPSKFCKENL--PSHEMIMVLEDENGLEYDAIY--IGNRTG--LSGGWRAFAMDHKLEDGDALVFELVRPERF--KVY 219
                     89**********************995..235689***************..555544..************************998888..777 PP

                     EE CS
              B3  96 vf 97 
                     ++
  XP_010922799.1 220 II 221
                     76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-22125222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-24126222IPR015300DNA-binding pseudobarrel domain
CDDcd100172.74E-29131222No hitNo description
SMARTSM010199.8E-26133224IPR003340B3 DNA binding domain
PROSITE profilePS5086312.774133224IPR003340B3 DNA binding domain
PfamPF023623.7E-17133222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MADDKNSYEE IRRQRIQENL KHLEDLGISK ISQCLLEVAK CEYKLLNCHA SPKPKKNLEM  60
TELRRSSRAR NPVPSYRDEV GDIDLRSYRK RYSRSDQNGR VYTGRVVSYE EQIRAVQRAE  120
KLQSDLNSNH PSFVKSMLRS HVSSCFWLGL PSKFCKENLP SHEMIMVLED ENGLEYDAIY  180
IGNRTGLSGG WRAFAMDHKL EDGDALVFEL VRPERFKVYI IKAIESQDSD DRIADAESKG  240
TNVSTKTEES IEDSTVSQKP VSNNGSFRRA ERARKRRPG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922799.10.0B3 domain-containing protein Os05g0481400 isoform X1
SwissprotQ5KQI44e-93Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A2H3YS650.0A0A2H3YS65_PHODC; B3 domain-containing protein Os05g0481400
STRINGXP_008803014.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.18e-60B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]