PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922640.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 328aa    MW: 36517.6 Da    PI: 5.165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922640.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1868118155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta +Aa a+++a+++++g
  XP_010922640.1  68 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFNTALDAAMAYDEAARAMYG 118
                     56*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.58E-3068126No hitNo description
PfamPF008479.4E-1368118IPR001471AP2/ERF domain
SMARTSM003801.6E-3469132IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2069126IPR016177DNA-binding domain
PROSITE profilePS5103221.02269126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-3169127IPR001471AP2/ERF domain
PRINTSPR003671.3E-97081IPR001471AP2/ERF domain
PRINTSPR003671.3E-992108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSEKERKKRL RNRHDGSHPV AEILAKWREQ NRQPDCSNDV EKYVRRVPAK GSRKGCMRGK  60
GGPENSHCNY RGVRQRTWGK WVAEIREPNR GSRLWLGTFN TALDAAMAYD EAARAMYGPC  120
ARLNLPQCDI AAKDTTLGDA ESYESTTTTS QLSNASGLEE SGIKAPKLEA GDKRRSINPP  180
QSTAEPVMSM VKTEADEELF KHFDSLQDLH QDIVGIEDIL GNMDLYPSSS TTITQNMKSE  240
KDQVGGVDTN TIGLNGTPSA LSFRTQSPDV KSPGTWCTMG QTPADMDDDN CDFIKQMSQD  300
MEFGFTNDQG IPELEFPDPR LFPESHGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1769126260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512RKKRLRNR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922640.10.0dehydration-responsive element-binding protein 2B isoform X1
TrEMBLA0A2H3YK390.0A0A2H3YK39_PHODC; dehydration-responsive element-binding protein 2C-like isoform X1
STRINGXP_008799804.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-39ERF family protein