PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010922579.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 240aa MW: 25549.6 Da PI: 9.5778 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.3e-18 | 14 | 59 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W +eEd +l ++v+ +G+++W++I++ ++ gRt+k+c++rw + XP_010922579.1 14 KGSWRPEEDAKLRELVEIYGPRNWSLISAGIP-GRTGKSCRLRWCNQ 59 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6.1e-17 | 68 | 110 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++v a++++G++ W++Iar ++ gRt++ +k++w++ XP_010922579.1 68 PFTAAEDAIIVAAHARYGNR-WAAIARLLP-GRTDNAVKNHWNST 110 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.707 | 9 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.25E-30 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.9E-16 | 13 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-17 | 14 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 15 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.02E-14 | 16 | 58 | No hit | No description |
PROSITE profile | PS51294 | 20.665 | 65 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-14 | 68 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-22 | 68 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.32E-12 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEGVGVGEEY SRVKGSWRPE EDAKLRELVE IYGPRNWSLI SAGIPGRTGK SCRLRWCNQL 60 SPDIHHRPFT AAEDAIIVAA HARYGNRWAA IARLLPGRTD NAVKNHWNST LRRRRLRGEK 120 PFSPADAAAA DASGSGGGAG SSVVDESDSE SVRKRQCRRE GKGCLAVAAA AAAPGPATAL 180 SLRPPGEGGE ERRSEVEASV VAVMRRMIAE EVRSYVHGLQ SDGGGGAVSL SVKSESASSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-39 | 13 | 114 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-38 | 13 | 114 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-38 | 13 | 114 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-39 | 13 | 114 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 5e-39 | 13 | 114 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010922579.1 | 1e-171 | transcription factor MYB44-like | ||||
TrEMBL | A0A2H3YXG8 | 1e-132 | A0A2H3YXG8_PHODC; transcription factor MYB73-like | ||||
STRING | XP_008805112.1 | 1e-133 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13544 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 3e-46 | myb domain protein 77 |