PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922494.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 367aa    MW: 42342.7 Da    PI: 5.0829
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922494.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-0691114226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     k  lC ff + G+C+ G +CkF+H+
  XP_010922494.1  91 KSILCEFFKA-GQCQKGFKCKFSHD 114
                     6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.27289116IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-589115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-689114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-491115IPR000571Zinc finger, CCCH-type
SMARTSM003562.6161198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.216161199IPR000571Zinc finger, CCCH-type
PfamPF165431.5E-19218302IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MPPKRQPSKS ELAKKQKVVE DKTFGLKNKN KSKNVQKYVQ SLQQSVQPKP DPSKIAAKKK  60
KEEDKARDKE LNDLFKIAVS QPKVPVGVDP KSILCEFFKA GQCQKGFKCK FSHDLNVQRK  120
GEKIDLYSDQ RDQPNETMED WDQETLEKVV ESKKKEYNQN KPTEIVCKYF LEAVEKKQYG  180
WFWVCPNGGK DCHYRHALPP GYVLKSQMKA LLEEETEKIS IEEEIENQRA KVTALTPLTP  240
ELFMQWKKKK MEEREAGLAA QRAERAKNDR MSGRELFLLD SSVFVDDAEA YEKYQREEES  300
DASKQKVENE NGHEEPSTST SIDDKDIEEV LVDDDDDELD IDELNELEAS LSKISIQIRE  360
PDIKASS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922494.10.0zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A2H3XH160.0A0A2H3XH16_PHODC; zinc finger CCCH domain-containing protein 11-like isoform X1
STRINGXP_008783661.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-154C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]