PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922396.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 252aa    MW: 29220.8 Da    PI: 6.3697
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922396.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed++lv+ v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
   XP_010922396.1 10 KGPWTEQEDLQLVCFVGLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 57
                     79********************************************97 PP
2Myb_DNA-binding56.18.2e-1863108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr+T++E+ l+++++ ++G++ W++Iar+++ gRt++++k++w++++
   XP_010922396.1  63 RGRMTPQEERLILELHSRWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.751557IPR017930Myb domain
SMARTSM007177.4E-16959IPR001005SANT/Myb domain
SuperFamilySSF466891.23E-299104IPR009057Homeodomain-like
PfamPF002493.8E-161057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-201164IPR009057Homeodomain-like
CDDcd001678.71E-111257No hitNo description
PROSITE profilePS5129426.65258112IPR017930Myb domain
SMARTSM007179.7E-1762110IPR001005SANT/Myb domain
PfamPF002498.5E-1663107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-2465111IPR009057Homeodomain-like
CDDcd001673.07E-1165108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVTVREETRK GPWTEQEDLQ LVCFVGLFGE RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG  60
LKRGRMTPQE ERLILELHSR WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQERKKNAL  120
SSSSSSSSLT DNSASVSEPP SDAGLEQHEL NGGSGCCCMA AGFVENEEGV KGYSMDQIWN  180
EIIATPEAVS ELSFGEWKND FFDTSWPPMP SPMWEYSSES PWKMDYEEFK MLPSLDDLLL  240
FSNYQHGREF YN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2871121105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010922396.10.0myb-related protein MYBAS2 isoform X1
SwissprotQ4JL761e-90MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A2H3XSU61e-137A0A2H3XSU6_PHODC; myb-related protein MYBAS2 isoform X1
STRINGXP_008788078.11e-138(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-80myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]