PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010922362.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | WOX | ||||||||
Protein Properties | Length: 252aa MW: 28344 Da PI: 8.3149 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.5 | 1.5e-20 | 18 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq+ +Le l+++ r+psae++++++ kl +++ ++V++WFqN++a++++ XP_010922362.1 18 SRWNPTKEQIAILEGLYRQgIRTPSAEQIQQITGKLreygSIEGKNVFYWFQNHKARQRQ 77 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 116.2 | 1.5e-37 | 17 | 79 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +RW+Pt+eQi iLe ly++G+rtP++e+iq+it +L+eyG ie+kNVfyWFQN+kaR+rqkq XP_010922362.1 17 GSRWNPTKEQIAILEGLYRQGIRTPSAEQIQQITGKLREYGSIEGKNVFYWFQNHKARQRQKQ 79 68***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 9.0E-6 | 15 | 82 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.15E-12 | 15 | 85 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.7E-8 | 16 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.7E-18 | 18 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.70E-6 | 19 | 79 | No hit | No description |
PROSITE profile | PS50071 | 10.398 | 23 | 78 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MEECKGSASA SSPLPSGSRW NPTKEQIAIL EGLYRQGIRT PSAEQIQQIT GKLREYGSIE 60 GKNVFYWFQN HKARQRQKQK QECFAYYSRL FHQAPPTPLL SPPPPPTCTN VVRRPYYFQV 120 PQVGGVGFYG PQFPNMFLPG ALHINPRPEH QVSRERIPEP YSNAPHPAYY YDHHATGMGH 180 STADLATMND PISHETLQLF PLHPTGILEE RSGSTLISAS AKSEILDDIV KDEVGGENQP 240 PFNFFRAPKK PC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010922362.1 | 0.0 | WUSCHEL-related homeobox 5-like | ||||
TrEMBL | A0A2H3ZWL4 | 1e-135 | A0A2H3ZWL4_PHODC; WUSCHEL-related homeobox 5-like | ||||
STRING | XP_008802781.1 | 1e-140 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7509 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 2e-40 | WUSCHEL related homeobox 2 |