PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010922120.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 660aa    MW: 75827.5 Da    PI: 7.8713
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010922120.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.8e-08601645244
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                      + W++  +  l++a k ++++   +W+++a+ ++ g+t  qc+ ++
   XP_010922120.1 601 DTWSETQERALIQALKTFPKDinqRWERVAAAVP-GKTVIQCRKKF 645
                      57********************************.********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.83E-2089176IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1105.1E-2193199IPR001623DnaJ domain
SMARTSM002711.3E-1397172IPR001623DnaJ domain
CDDcd062574.24E-1398169IPR001623DnaJ domain
PfamPF002268.7E-1898177IPR001623DnaJ domain
PROSITE profilePS5007618.13698180IPR001623DnaJ domain
PRINTSPR006251.2E-7103121IPR001623DnaJ domain
PRINTSPR006251.2E-7121136IPR001623DnaJ domain
PRINTSPR006251.2E-7152172IPR001623DnaJ domain
PROSITE patternPS006360157176IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.605.6E-5466514IPR009057Homeodomain-like
PROSITE profilePS500906.307466521IPR017877Myb-like domain
SuperFamilySSF466892.77E-7466514IPR009057Homeodomain-like
SMARTSM007173.0E-5470523IPR001005SANT/Myb domain
PfamPF002491.8E-5472513IPR001005SANT/Myb domain
PROSITE profilePS5129310.246598653IPR017884SANT domain
Gene3DG3DSA:1.10.10.601.1E-5599645IPR009057Homeodomain-like
SMARTSM007175.5E-8599651IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-9601655IPR009057Homeodomain-like
CDDcd001678.92E-7602649No hitNo description
PfamPF002493.4E-7602645IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MDARESPLLI TYLPEILNGE PIFISSNCLP VKAFNFEPAG HAFHSAALKF FGFCEEEDTD  60
TDDQSVLSDD RGQAYIPSSD FYSSRGKKKS VAGSKQQDHY ALLGLGHLRF LATEEQIRKS  120
YRETALKHHP DKQAALILAE ETEEAKQAKK DEIESHFKAI QEAYEVLIDP VKRRIYDSTD  180
EFDDDIPTDC APQDFFKVFG PAFMRNGRWS TNQPIPSLGD ENTPLNEVDS FYNFWYTFKS  240
WREFPHADEF DLEQAESRDH KRWMERQNAK LREKARKEEY ARIRALVDNA YKRDPRILKR  300
KEEEKAEKRR KKEAKFLARK LQEEEAARAA EEERRLKEEE EKRASEAALN QKKLKEKEKK  360
LLRKERTRLR TLSAAVVSKN LLDLAEDDVE KVCMTLEMDQ LRHLCDDMER KEGSKRAQLL  420
KDALSGDSSN AMKQEAKNMQ PNGSQDLGTK TNGVAAQVRL DNPLSNYEKK EKPWEKEEIE  480
MLRKGMQKYP KGTSRRWEVI SDYIGTGRSV EEILKATKTI LLQKPDSFKA FDSFLEKRKP  540
AQAISSPLTT RIESEGLPVE GTQDSSPKIA AKQPTNTTNN QKPVDGVVSA FNGVPSGTEH  600
DTWSETQERA LIQALKTFPK DINQRWERVA AAVPGKTVIQ CRKKFALMKE SFRSKKNAEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A6e-2119429720123Zuotin
5dje_B6e-2119429720123Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019706263.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A2H4A0H40.0A0A2H4A0H4_PHODC; dnaJ homolog subfamily C member 2-like
STRINGXP_008811954.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain