PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010921558.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 278aa    MW: 31175.3 Da    PI: 9.6908
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010921558.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.6e-20129178255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +grW+AeIrdp+    r kr++lg+f+taeeAa+ ++ a+  l+g
  XP_010921558.1 129 RFRGVRRRP-WGRWAAEIRDPT----RrKRVWLGTFDTAEEAAAVYDSAAVMLKG 178
                     79*******.**********84....34*********************988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.236129186IPR001471AP2/ERF domain
PfamPF008471.0E-12129178IPR001471AP2/ERF domain
SMARTSM003808.2E-34129192IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-22129187IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-30129187IPR001471AP2/ERF domain
PRINTSPR003671.9E-10130141IPR001471AP2/ERF domain
CDDcd000181.01E-23137186No hitNo description
PRINTSPR003671.9E-10152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGMMGTCFAS GKLDLWLRVV SPRPSISDTT EKFSEHVTTT RKTVPGNKLA GGLRRFGMVR  60
RCRRKVVRIY FTDVDATDSS SSDEETGGLA RRRVKRHVHE VGIEVAAPAR RVPRPKRPAR  120
KPLAEDRKRF RGVRRRPWGR WAAEIRDPTR RKRVWLGTFD TAEEAAAVYD SAAVMLKGAN  180
AVTNFPTEPA VTVTSDSSGK SEDSPLPLPL PSPTSVLRYG GEQTPFDFLE YGDVDAFGFR  240
VDSPLCLTDG YFPNCHRWEA DEFGEFNAED FSLEVVTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-19121188674Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114134PKRPARKPLAEDRKRFRGVRR
2119136RKPLAEDRKRFRGVRRRP
3133152RRRPWGRWAAEIRDPTRRKR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921558.10.0LOW QUALITY PROTEIN: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046826e-46PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A2H3ZFW81e-130A0A2H3ZFW8_PHODC; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_008813239.11e-131(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15640615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.16e-10cytokinin response factor 1