PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010921289.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 340aa MW: 39027.8 Da PI: 8.0861 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.5 | 2.6e-53 | 7 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+ +yLk+++++ ++++ ++i+evdiyk++PwdLp+k+ +++ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++ XP_010921289.1 7 LPPGFRFHPTDEELILHYLKNRAASVPCPV-SIIAEVDIYKFDPWDLPAKAMFGDREWYFFSPRDRKYPNGIRPNRAAASGYWKATGTDKPIHTS 100 79****************************.89***************888889**************************************998 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++g+kk Lvfykgr pkg kt+W+mheyrl XP_010921289.1 101 kGNENIGVKKALVFYKGRPPKGLKTNWIMHEYRL 134 67788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-65 | 5 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.105 | 7 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-27 | 8 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MSNPTSLPPG FRFHPTDEEL ILHYLKNRAA SVPCPVSIIA EVDIYKFDPW DLPAKAMFGD 60 REWYFFSPRD RKYPNGIRPN RAAASGYWKA TGTDKPIHTS KGNENIGVKK ALVFYKGRPP 120 KGLKTNWIMH EYRLAEAQNS NSYKPMKFGD SSMRLDDWVL CRIYKKSHHL PSVPTPMDRE 180 QEDSGIEDSY YSNLTNITPQ NPLRLHKSSS ISELLEDYSS LSHLFDNQPE IPGSSDHAYI 240 MPQPSSNQLF INSSGRYNLV QQLPQAEPTA PNAENYLKRQ RMSDIYSEEN NGLFYPSKKR 300 NDSFIYTNFS NQFDSPQCSM LNQPFFSSQQ ILLNSHLGLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-72 | 6 | 166 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-72 | 6 | 166 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-72 | 6 | 166 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-72 | 6 | 166 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-72 | 6 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-72 | 6 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-72 | 6 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-72 | 6 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-72 | 6 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-72 | 6 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-72 | 6 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-72 | 6 | 166 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-72 | 6 | 166 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-72 | 6 | 166 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00333 | DAP | Transfer from AT3G04070 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010921289.1 | 0.0 | NAC domain-containing protein 2 | ||||
Swissprot | Q84TD6 | 1e-100 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | A0A2H3XEW7 | 0.0 | A0A2H3XEW7_PHODC; NAC transcription factor 47-like | ||||
STRING | XP_008782759.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 1e-103 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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