PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920847.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 671aa    MW: 70648.5 Da    PI: 7.8074
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920847.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97e-08264284526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C+ Gd C +aHg
  XP_010920847.1 264 PCPEFRK-GSCRNGDACEYAHG 284
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484036.68E-1278163IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-1382173IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.84782188IPR020683Ankyrin repeat-containing domain
PfamPF127964.6E-882151IPR020683Ankyrin repeat-containing domain
SMARTSM002481782112IPR002110Ankyrin repeat
CDDcd002048.08E-684184No hitNo description
PROSITE profilePS5008812.529117152IPR002110Ankyrin repeat
SMARTSM002480.0019117149IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.106.5E-5256285IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4259285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.141259286IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-5264284IPR000571Zinc finger, CCCH-type
SMARTSM0035621294317IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.972294318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MCSGLRKPSP PPSPPTGPAV MAAGGDSEKL SVAALPASLL LELSASDDFP AFKRAVEDDG  60
LPLDCPAPWY CRSLNRRTMG FEQRTPLMIA ALYGSPTVLA YILAASPAEA SRRSPSDGAT  120
PLHCAASGGS PFSLGIVKML MDAAADVDAT DAAGNRPGDV IARHFSASIT RSLEVVLKAG  180
SGISSLGGAK EEETKSGEKK YPLDITLPDI NNGIYGTDEF RMYTFKVKPC SRAYSHDWTE  240
CPFVHPGENA RRRDPRKYFY SCVPCPEFRK GSCRNGDACE YAHGVFESWL HPDQYRTRLC  300
KDETGCNRRV CFFAHKPEEL RSVNPSAASV AGMVLSSPKS SSGLSSLDMA TALMMMQQTG  360
SGMSPSASSG LGAATAWMNQ PGSLATPPSL QLPSSRLKAS LGAFDLDLLG LEGYQQKLID  420
EFSSTASPRA NWTPNSLAAA SRASDINELF GSLNPSVLSQ LQGLSLKKTA AASSSAGAQF  480
QSPTGVRSQL LSGYGGNLPP SPTVSGTSSF GLDHSMAKAI MSSRASAFAK RSQSFIDRGA  540
MAGRQSTLSS MTTAAAGTSS VLSDWGSPDG KLDWGIQGDE LNKLRKAASF NFRTNQAGSG  600
FGGAAPAAAA VPGRLDEPDL SWVQSLVKDG PAAPMGRRGL EQQQKGYQLN GAGGDFHGSE  660
LLSSWEEKIM A
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920847.10.0zinc finger CCCH domain-containing protein 33
SwissprotQ688R31e-176C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A2H3Y4590.0A0A2H3Y459_PHODC; zinc finger CCCH domain-containing protein 33
STRINGXP_008793149.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-147C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]