PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920422.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 805aa    MW: 88534.1 Da    PI: 5.8128
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920422.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-182482357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_010920422.1 24 KYVRYTAEQVEALERVYTECPKPSSMRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 82
                    56789****************************************************97 PP
2START116.24.7e-3718933862205
                     HHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSE CS
           START  62 veellddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpS 150
                      +e+l+d++ W +++++ e+      g  g+++l +++++a+++l+p Rdf+++Ry+  l++g++v++++S++     p+    +++vRae+lpS
  XP_010920422.1 189 IAEILKDRPSWFRDCRSLEVFSMFPAGngGTIELVYMQTYAPTTLAPaRDFWTLRYTIGLEDGSLVVCERSLSGSGGGPNattAHQFVRAEMLPS 283
                     578899999***************99999********************************************99999999999*********** PP

                     EEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 151 giliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                     g+li+p+++g+s v++v+h dl++++++++lr+l++s+++ ++k++ a+l++ ++
  XP_010920422.1 284 GYLIRPCDGGGSIVHIVDHLDLEAWSVPEVLRPLYESSRIVAQKMTIAALRHVRQ 338
                     **************************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.2E-152187IPR001356Homeobox domain
CDDcd000865.05E-162284No hitNo description
PfamPF000466.9E-162482IPR001356Homeobox domain
SuperFamilySSF466893.64E-162487IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-182682IPR009057Homeodomain-like
PROSITE profilePS5007115.1922783IPR001356Homeobox domain
CDDcd146862.23E-676114No hitNo description
SMARTSM002341.5E-26136339IPR002913START domain
SuperFamilySSF559617.0E-28161341No hitNo description
PROSITE profilePS5084820.805173348IPR002913START domain
PfamPF018526.1E-35184338IPR002913START domain
Gene3DG3DSA:3.30.530.207.3E-17187334IPR023393START-like domain
PfamPF086709.1E-51662804IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MATAMAVRSG GGGGLEKQPI DPGKYVRYTA EQVEALERVY TECPKPSSMR RQQLIRECPI  60
LANIEPKQIK VWFQNRRCRE KQRKEASRLQ AVNRKLTAMN KLLMEENERL QKQVTQLVHE  120
NAYMRQQLQN ASLANDTSCE SVVTTPQNAL RDASNPAGLL SIAEETLAEF LSKATGTAVD  180
WVQMPGMKIA EILKDRPSWF RDCRSLEVFS MFPAGNGGTI ELVYMQTYAP TTLAPARDFW  240
TLRYTIGLED GSLVVCERSL SGSGGGPNAT TAHQFVRAEM LPSGYLIRPC DGGGSIVHIV  300
DHLDLEAWSV PEVLRPLYES SRIVAQKMTI AALRHVRQIA QEINGEVVYT LGRQPAVLRT  360
FSQRLSRGFN DAINGFVDDG WSLMGGDGVE DVVVATNTSK KISAQANSAN AFSVSGGVIC  420
AKASMLLQNV PPALLVQFLR EHRSEWADYN VDAYSAASLK AGSCSFPGLR PLRFSGSQII  480
MALAHTVENE EFLEVVRLEG QAVTQDEAMV SRDVHLLQLC SGIDENAVGA CFQLVFAPID  540
ELFPDDAPLL PSGFRVIPLD MKSEGLASSR TLDLASSLEV GSATNRCAGD TSTNDHSLRS  600
VLTIAFQFPY EVNLQDSVAA MARQYVRSIV SAVQRVSMAL SPSRPGLHVG QKLLPGSPEA  660
VTLARWICQS YNYYLGMELL KSDGETGESL LKVLWHHQDA ILCCSFKMQP IFTFANQAGL  720
DMLETTLVAL QDISLDKIFD ESGRKALCSE FAKLMEQGYA YLSAGVCMSG MGRHVSYEQA  780
IAWKVPAEDN SIHCLAFCFV NWSFI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920422.10.0homeobox-leucine zipper protein HOX9 isoform X2
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLA0A2H3Y0E50.0A0A2H3Y0E5_PHODC; homeobox-leucine zipper protein HOX9-like isoform X1
STRINGXP_008791541.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein