PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010920421.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 837aa MW: 91623.7 Da PI: 5.9155 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.1 | 3.1e-18 | 24 | 82 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_010920421.1 24 KYVRYTAEQVEALERVYTECPKPSSMRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 82 56789****************************************************97 PP | |||||||
2 | START | 158.3 | 6.2e-50 | 162 | 370 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+ sg a+ra+g+v +++ +e+l+d++ W +++++ e+ g g+++l XP_010920421.1 162 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSIGIVAISHCTSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFSMFPAGngGTIELV 255 7899******************************************************.7777777777***************99999****** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++++a+++l+p Rdf+++Ry+ l++g++v++++S++ p+ +++vRae+lpSg+li+p+++g+s v++v+h dl++++++++lr+l+ XP_010920421.1 256 YMQTYAPTTLAPaRDFWTLRYTIGLEDGSLVVCERSLSGSGGGPNattAHQFVRAEMLPSGYLIRPCDGGGSIVHIVDHLDLEAWSVPEVLRPLY 350 **************************************99999999999********************************************** PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s+++ ++k++ a+l++ ++ XP_010920421.1 351 ESSRIVAQKMTIAALRHVRQ 370 ***************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 3.2E-15 | 21 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.38E-16 | 22 | 84 | No hit | No description |
Pfam | PF00046 | 7.2E-16 | 24 | 82 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.81E-16 | 24 | 87 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-18 | 26 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.192 | 27 | 83 | IPR001356 | Homeobox domain |
CDD | cd14686 | 1.45E-6 | 76 | 114 | No hit | No description |
PROSITE profile | PS50848 | 26.172 | 152 | 380 | IPR002913 | START domain |
CDD | cd08875 | 2.31E-72 | 156 | 372 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 2.2E-20 | 161 | 366 | IPR023393 | START-like domain |
SMART | SM00234 | 1.9E-41 | 161 | 371 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.18E-36 | 161 | 373 | No hit | No description |
Pfam | PF01852 | 6.5E-48 | 162 | 370 | IPR002913 | START domain |
Pfam | PF08670 | 9.7E-51 | 694 | 836 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 837 aa Download sequence Send to blast |
MATAMAVRSG GGGGLEKQPI DPGKYVRYTA EQVEALERVY TECPKPSSMR RQQLIRECPI 60 LANIEPKQIK VWFQNRRCRE KQRKEASRLQ AVNRKLTAMN KLLMEENERL QKQVTQLVHE 120 NAYMRQQLQN ASLANDTSCE SVVTTPQNAL RDASNPAGLL SIAEETLAEF LSKATGTAVD 180 WVQMPGMKPG PDSIGIVAIS HCTSGVAARA CGLVSLEPTK IAEILKDRPS WFRDCRSLEV 240 FSMFPAGNGG TIELVYMQTY APTTLAPARD FWTLRYTIGL EDGSLVVCER SLSGSGGGPN 300 ATTAHQFVRA EMLPSGYLIR PCDGGGSIVH IVDHLDLEAW SVPEVLRPLY ESSRIVAQKM 360 TIAALRHVRQ IAQEINGEVV YTLGRQPAVL RTFSQRLSRG FNDAINGFVD DGWSLMGGDG 420 VEDVVVATNT SKKISAQANS ANAFSVSGGV ICAKASMLLQ NVPPALLVQF LREHRSEWAD 480 YNVDAYSAAS LKAGSCSFPG LRPLRFSGSQ IIMALAHTVE NEEFLEVVRL EGQAVTQDEA 540 MVSRDVHLLQ LCSGIDENAV GACFQLVFAP IDELFPDDAP LLPSGFRVIP LDMKSEGLAS 600 SRTLDLASSL EVGSATNRCA GDTSTNDHSL RSVLTIAFQF PYEVNLQDSV AAMARQYVRS 660 IVSAVQRVSM ALSPSRPGLH VGQKLLPGSP EAVTLARWIC QSYNYYLGME LLKSDGETGE 720 SLLKVLWHHQ DAILCCSFKM QPIFTFANQA GLDMLETTLV ALQDISLDKI FDESGRKALC 780 SEFAKLMEQG YAYLSAGVCM SGMGRHVSYE QAIAWKVPAE DNSIHCLAFC FVNWSFI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010920419.1 | 0.0 | homeobox-leucine zipper protein HOX9 isoform X1 | ||||
Refseq | XP_019705716.1 | 0.0 | homeobox-leucine zipper protein HOX9 isoform X1 | ||||
Swissprot | A2Z8L4 | 0.0 | HOX9_ORYSI; Homeobox-leucine zipper protein HOX9 | ||||
TrEMBL | A0A2H3Y0E5 | 0.0 | A0A2H3Y0E5_PHODC; homeobox-leucine zipper protein HOX9-like isoform X1 | ||||
STRING | XP_008791541.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |