PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920418.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 837aa    MW: 91623.7 Da    PI: 5.9155
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920418.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-182482357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_010920418.1 24 KYVRYTAEQVEALERVYTECPKPSSMRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 82
                    56789****************************************************97 PP
2START158.36.2e-501623702205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+  sg a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++l 
  XP_010920418.1 162 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSIGIVAISHCTSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFSMFPAGngGTIELV 255
                     7899******************************************************.7777777777***************99999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l+p Rdf+++Ry+  l++g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s v++v+h dl++++++++lr+l+
  XP_010920418.1 256 YMQTYAPTTLAPaRDFWTLRYTIGLEDGSLVVCERSLSGSGGGPNattAHQFVRAEMLPSGYLIRPCDGGGSIVHIVDHLDLEAWSVPEVLRPLY 350
                     **************************************99999999999********************************************** PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+++ ++k++ a+l++ ++
  XP_010920418.1 351 ESSRIVAQKMTIAALRHVRQ 370
                     ***************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.2E-152187IPR001356Homeobox domain
CDDcd000865.38E-162284No hitNo description
PfamPF000467.2E-162482IPR001356Homeobox domain
SuperFamilySSF466893.81E-162487IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-182682IPR009057Homeodomain-like
PROSITE profilePS5007115.1922783IPR001356Homeobox domain
CDDcd146861.45E-676114No hitNo description
PROSITE profilePS5084826.172152380IPR002913START domain
CDDcd088752.31E-72156372No hitNo description
Gene3DG3DSA:3.30.530.202.2E-20161366IPR023393START-like domain
SMARTSM002341.9E-41161371IPR002913START domain
SuperFamilySSF559616.18E-36161373No hitNo description
PfamPF018526.5E-48162370IPR002913START domain
PfamPF086709.7E-51694836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MATAMAVRSG GGGGLEKQPI DPGKYVRYTA EQVEALERVY TECPKPSSMR RQQLIRECPI  60
LANIEPKQIK VWFQNRRCRE KQRKEASRLQ AVNRKLTAMN KLLMEENERL QKQVTQLVHE  120
NAYMRQQLQN ASLANDTSCE SVVTTPQNAL RDASNPAGLL SIAEETLAEF LSKATGTAVD  180
WVQMPGMKPG PDSIGIVAIS HCTSGVAARA CGLVSLEPTK IAEILKDRPS WFRDCRSLEV  240
FSMFPAGNGG TIELVYMQTY APTTLAPARD FWTLRYTIGL EDGSLVVCER SLSGSGGGPN  300
ATTAHQFVRA EMLPSGYLIR PCDGGGSIVH IVDHLDLEAW SVPEVLRPLY ESSRIVAQKM  360
TIAALRHVRQ IAQEINGEVV YTLGRQPAVL RTFSQRLSRG FNDAINGFVD DGWSLMGGDG  420
VEDVVVATNT SKKISAQANS ANAFSVSGGV ICAKASMLLQ NVPPALLVQF LREHRSEWAD  480
YNVDAYSAAS LKAGSCSFPG LRPLRFSGSQ IIMALAHTVE NEEFLEVVRL EGQAVTQDEA  540
MVSRDVHLLQ LCSGIDENAV GACFQLVFAP IDELFPDDAP LLPSGFRVIP LDMKSEGLAS  600
SRTLDLASSL EVGSATNRCA GDTSTNDHSL RSVLTIAFQF PYEVNLQDSV AAMARQYVRS  660
IVSAVQRVSM ALSPSRPGLH VGQKLLPGSP EAVTLARWIC QSYNYYLGME LLKSDGETGE  720
SLLKVLWHHQ DAILCCSFKM QPIFTFANQA GLDMLETTLV ALQDISLDKI FDESGRKALC  780
SEFAKLMEQG YAYLSAGVCM SGMGRHVSYE QAIAWKVPAE DNSIHCLAFC FVNWSFI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920419.10.0homeobox-leucine zipper protein HOX9 isoform X1
RefseqXP_019705716.10.0homeobox-leucine zipper protein HOX9 isoform X1
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLA0A2H3Y0E50.0A0A2H3Y0E5_PHODC; homeobox-leucine zipper protein HOX9-like isoform X1
STRINGXP_008791541.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein