PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010920036.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family BBR-BPC
Protein Properties Length: 278aa    MW: 30690.1 Da    PI: 10.5223
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010920036.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind251.65.1e-775227875301
       GAGA_bind  75 verdnkllalllvenslasalpvgvqvlsgtksidslqq..lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkk 167
                     ++rd+ + +      ++ ++  ++ + ls+tk+++s++   ++ + ++ + +++  e  +++  +e ++  +++++++ k+++++ +k+ ++k++
  XP_010920036.1  52 INRDSIIGECNSGVSAMDFSWIPQRSFLSQTKNMNSTHAtpVNSEMMDVQGMPVAAEGAMQNGVLEAKPLRVRKQHRSTKKNNHTAAKVLRQKEP 146
                     555555555555555555666667788899999998888433334455555667777777777777777778888888888999999******** PP

       GAGA_bind 168 kkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSq 262
                     kk+++++ k++ +++  +  k+ekk++d+ ++g  +D s++PvPvCsCtG+++qCY+WG+GGWqS+CCt++iS yPLP+s+ r+gaR+agrKmS 
  XP_010920036.1 147 KKQPSVPAKRKGSST--SMGKREKKTQDIIVDGTMVDFSNVPVPVCSCTGVPHQCYRWGAGGWQSSCCTMSISEYPLPMSPSRPGARLAGRKMSI 239
                     **9999988777776..679*************************************************************************** PP

       GAGA_bind 263 gafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     ga++klL +LaaeG+dls +vDLkdhWA+HGtnkfv i+
  XP_010920036.1 240 GAYRKLLHRLAAEGHDLSYAVDLKDHWARHGTNKFVIIK 278
                     ************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062173.9E-741278IPR010409GAGA-binding transcriptional activator
SMARTSM012261.1E-811278IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDRRGRLGTR NWEFSNHTGH AESVLKPVSC LSVPNSTVSG HQETSPKMSS YINRDSIIGE  60
CNSGVSAMDF SWIPQRSFLS QTKNMNSTHA TPVNSEMMDV QGMPVAAEGA MQNGVLEAKP  120
LRVRKQHRST KKNNHTAAKV LRQKEPKKQP SVPAKRKGSS TSMGKREKKT QDIIVDGTMV  180
DFSNVPVPVC SCTGVPHQCY RWGAGGWQSS CCTMSISEYP LPMSPSRPGA RLAGRKMSIG  240
AYRKLLHRLA AEGHDLSYAV DLKDHWARHG TNKFVIIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
117DRRGRLG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029120039.10.0protein BASIC PENTACYSTEINE7
SwissprotO822864e-59BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A2H3XTM70.0A0A2H3XTM7_PHODC; protein BASIC PENTACYSTEINE7 isoform X2
STRINGXP_008788595.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.41e-61basic pentacysteine 7