PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919976.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 805aa    MW: 88408.1 Da    PI: 6.0854
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919976.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.4e-20102157156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  XP_010919976.1 102 KKRYHRHTSRQIQAMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 157
                     688999***********************************************998 PP
2START142.83.2e-453035265206
                     HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
           START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..............dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                     +aa+ l+++   +ep+Wv+      e      vl  +e s+               ++ ea r+s++v+m++ +lv  +ld + +W e ++    
  XP_010919976.1 303 TAADHLLRMCHTNEPLWVRNGsvakE------VLDLEEYSRMfhwpmdlkqhqngdFRAEATRDSALVIMNSITLVDAFLDAN-KWMELFPsivs 390
                     67788888999999999987744443......44433333334445556667778889*************************.*******9999 PP

                     EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
           START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                      a t++ i+ g      g l+lm+ael ++splvp R+ +f Ry++q +++g+wvivd  vd  ++   + ++ R +++pSg++i++++ng+skv
  XP_010919976.1 391 TARTVQIITAGisghgnGSLHLMQAELHFPSPLVPtREAYFFRYCQQnSEEGTWVIVDFPVDGFNDSL-DMPFPRYRRRPSGCVIQDMPNGYSKV 484
                     9*********************************************************9999999976.9************************* PP

                     EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +wveh++++++  h +++++v+sg+a+ga +wv+ lqrqce+
  XP_010919976.1 485 IWVEHAEVEDKPLHRIFNQFVSSGMAFGATRWVSILQRQCER 526
                     ****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-2187153IPR009057Homeodomain-like
SuperFamilySSF466893.01E-1990160IPR009057Homeodomain-like
PROSITE profilePS5007117.0799159IPR001356Homeobox domain
SMARTSM003898.4E-19100163IPR001356Homeobox domain
CDDcd000868.38E-19102160No hitNo description
PfamPF000467.9E-18102157IPR001356Homeobox domain
PROSITE patternPS000270134157IPR017970Homeobox, conserved site
PROSITE profilePS5084843.495290529IPR002913START domain
SuperFamilySSF559619.01E-30293528No hitNo description
CDDcd088751.21E-112294525No hitNo description
SMARTSM002341.6E-29299526IPR002913START domain
PfamPF018522.8E-37303526IPR002913START domain
SuperFamilySSF559615.16E-17544785No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MYGDCQVLSS MVGGGGGANV VSPDSLFSSP IQNPSFSFMS NMPFHSFSAI VPKEEGMMVM  60
GRGGGKEEEM ESGSGSGHVD GISCGEEQDN EQQQQQQPPA KKKRYHRHTS RQIQAMEALF  120
KECPHPDDKQ RLKLSQELGL KPRQVKFWFQ NRRTQMKAQQ DRQDNVLLRA ENESLKNENF  180
RLQAAIRNVV CPSCGGPAIL GEMSFDEQHL RIENARLKEE LERLSCITSR YGSRPVQPLG  240
PTPLILPSLD LDMGIYSRHF NEPPIVSCSD IIPVPPISDG HQPFSGMLIM DQDKPLVLDL  300
TMTAADHLLR MCHTNEPLWV RNGSVAKEVL DLEEYSRMFH WPMDLKQHQN GDFRAEATRD  360
SALVIMNSIT LVDAFLDANK WMELFPSIVS TARTVQIITA GISGHGNGSL HLMQAELHFP  420
SPLVPTREAY FFRYCQQNSE EGTWVIVDFP VDGFNDSLDM PFPRYRRRPS GCVIQDMPNG  480
YSKVIWVEHA EVEDKPLHRI FNQFVSSGMA FGATRWVSIL QRQCERLASL MARNISDLGV  540
IPSPEARKNM MKLSQRMIRT FCANISAAGV QSWTALSDSS DDTTRVTTRK NTEPGQPNGV  600
ILTAVSTTWL PFSHQQVFDL LTDEQRRSQL DVLSNGNSYH EVAHIANGSH PRNCVSLLRI  660
NAASNSSQNV ELLLQESSTH PSGGSLVVYA TIDVDAVQVA MSGEDPSFIP LLPTGFVISP  720
PGPSTTGVTN ATAPTAEAGA SGDGSATGCL LTVGMQVLAS AVPSAKLNLS SVTAINNHLC  780
NAVHQITAAL GAGAKAETVI ASLEQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919976.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A3Q0ICG50.0A0A3Q0ICG5_PHODC; homeobox-leucine zipper protein ROC3
STRINGXP_008800084.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78463441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7