PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919850.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARR-B
Protein Properties Length: 575aa    MW: 64258.5 Da    PI: 6.4182
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919850.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like894.3e-28336390156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k +++Wtp+LH+rFv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR +
  XP_010919850.1 336 KMKVDWTPDLHRRFVQAVEQL-GVDQAIPSKILELMKVEGLTRHNVASHLQKYRKH 390
                     5689*****************.********************************75 PP
2Response_reg27.61.5e-10201261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+ d++   ++  +  le  +y +v    + ++ale + +kd  +++ ++ +   +++G+  ++ ++++  +lp iv++    ++++ +++ +G
  XP_010919850.1  20 VLLLDEHGPSAHETKLKLEAMDY-IVSLYFNEQDALEAISKKDesFHVAIVEVATGNCEGS--FRFLETAR-DLPTIVISNVRCMSTMMKCIALG 110
                     677788888888888889999**.***************988889*************996..55565555.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a +fl+Kp ++++l++
  XP_010919850.1 111 AAEFLEKPLSEDKLRN 126
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.5E-1316170No hitNo description
SuperFamilySSF521722.13E-1216132IPR011006CheY-like superfamily
PROSITE profilePS5011018.45919132IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.4E-620127IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.63E-621131No hitNo description
PROSITE profilePS5129417.216333392IPR017930Myb domain
SuperFamilySSF466893.23E-18334392IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-27334392IPR009057Homeodomain-like
TIGRFAMsTIGR015578.2E-26336390IPR006447Myb domain, plants
PfamPF002495.6E-8339388IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MICSADDLVA WKDFPKGLRV LLLDEHGPSA HETKLKLEAM DYIVSLYFNE QDALEAISKK  60
DESFHVAIVE VATGNCEGSF RFLETARDLP TIVISNVRCM STMMKCIALG AAEFLEKPLS  120
EDKLRNIWQH VVHKAFNAGG DVLSKSLKPI KETVVSMLQL QTETAELKIE AQSEAENTEK  180
EHENSHENTV ANDRFPGPST PQQEHGGRLQ SEGDCQEKTN SSIERGCTEN IKDSLEVRNC  240
SSLESKSVEH TCTDSIAAAE TEEILPSRPE EAAAEEEVNS ADGSKTAECS GVKEGSLASS  300
RLHNGDNVES TADDPKKKLV ANSDSHSNGS RSNKKKMKVD WTPDLHRRFV QAVEQLGVDQ  360
AIPSKILELM KVEGLTRHNV ASHLQKYRKH RRHILPKEDD RRWQQYRDLS PMGYMRKPLV  420
AYHPYHPHCG VPLGHVYPAW AHPSYPTPAV QMWGHPGFPT WHQPPEGWPW KTHPAINADA  480
WGCPVLPPYS HYTVPTRSLM SNGMNANGDG NRQFKDPYDL QQAEEMIDAV VKEAMSKPWL  540
PLPLGLKPPS TDSVLAELHR RGLRIVPPAI HPPLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-16341388653Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919850.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_010919851.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_019705831.10.0two-component response regulator-like APRR2 isoform X1
TrEMBLA0A2H3XJH80.0A0A2H3XJH8_PHODC; two-component response regulator-like APRR2
STRINGXP_008784680.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2076367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-129ARR-B family protein