PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919684.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 274aa    MW: 31746.7 Da    PI: 10.1788
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919684.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.7e-173781798
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    +lp kf+++++ k  +    +l+++ g+ W vk+  ++ s+  ++++GW+eF++a++L++g f+vF ++g++ f  +v+vf+
  XP_010919684.1  3 SLPHKFIRNINTK--KCERAVLRSPLGNLWHVKV--QGDSENLYFGEGWQEFARAHQLNVGFFLVFDYEGDMAF--NVTVFD 78
                    79*****999766..4458***************..**************************************..888887 PP
2B349.38.6e-16147246299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                     + + +ps+ l +  l lp kf ++ +++k+   +++l+d++g+ W +++ y   +   +r  +++GW++F+  n+L+eg +++Fkl+++ s+  l
  XP_010919684.1 147 KATIKPSNLLWKPYLNLPYKFRTSSNISKK--DKIILRDPKGQLWPIRIYYssdNALCRRAQFGAGWEKFCINNNLEEGGTCIFKLVSKsSNDIL 239
                     5566677777778899*****877766643..48***************7788555555599************************988799999 PP

                     EEEEE-S CS
              B3  93 vvkvfrk 99 
                     +v++f+k
  XP_010919684.1 240 HVSIFKK 246
                     ***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.043180IPR003340B3 DNA binding domain
SMARTSM010191.0E-5180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-19282IPR015300DNA-binding pseudobarrel domain
CDDcd100177.60E-15378No hitNo description
SuperFamilySSF1019366.08E-18386IPR015300DNA-binding pseudobarrel domain
PfamPF023626.5E-14377IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-21141248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-20142247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-17144245No hitNo description
PROSITE profilePS5086313.86146247IPR003340B3 DNA binding domain
SMARTSM010198.8E-12146247IPR003340B3 DNA binding domain
PfamPF023624.8E-13150246IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MQSLPHKFIR NINTKKCERA VLRSPLGNLW HVKVQGDSEN LYFGEGWQEF ARAHQLNVGF  60
FLVFDYEGDM AFNVTVFDLS MCMKEYTPVN NSESNSKNHA NDLISANVLK NMLQKSMKRN  120
RRAVIAFENK HKMSEMNSFC ASGPHFKATI KPSNLLWKPY LNLPYKFRTS SNISKKDKII  180
LRDPKGQLWP IRIYYSSDNA LCRRAQFGAG WEKFCINNNL EEGGTCIFKL VSKSSNDILH  240
VSIFKKKCRK QWEPQARVGY SLPERLYLCI AKNI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919684.20.0B3 domain-containing protein Os03g0212300
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-22B3 family protein