PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919667.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 323aa    MW: 35556.2 Da    PI: 5.0248
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919667.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.3e-143378146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde+l+++v+++G+++W++I ++  + R++k+c++rw +
   XP_010919667.1 33 KGPWMAEEDEILIEYVRKHGPRDWSSIRSKGLLPRSGKSCRLRWVN 78
                     79*************************8876677**********87 PP
2Myb_DNA-binding46.96.6e-1589129345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++++eE+ + +d+ +q+G++ W++Ia +++ gRt++++k++w 
   XP_010919667.1  89 KFSPEEERIVIDLQAQFGNK-WARIATYLP-GRTDNDVKNFWS 129
                      79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.4842884IPR017930Myb domain
SuperFamilySSF466896.94E-2831128IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-203181IPR009057Homeodomain-like
SMARTSM007171.2E-123282IPR001005SANT/Myb domain
PfamPF002491.5E-123378IPR001005SANT/Myb domain
CDDcd001677.31E-133580No hitNo description
Gene3DG3DSA:1.10.10.605.0E-1982134IPR009057Homeodomain-like
PROSITE profilePS5129418.68785136IPR017930Myb domain
SMARTSM007175.3E-1386134IPR001005SANT/Myb domain
PfamPF002495.6E-1389129IPR001005SANT/Myb domain
CDDcd001671.47E-1189128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MQEARGGSGH TSSSSKTNKN GKEEEGGGMV LKKGPWMAEE DEILIEYVRK HGPRDWSSIR  60
SKGLLPRSGK SCRLRWVNKL KPDLKTGCKF SPEEERIVID LQAQFGNKWA RIATYLPGRT  120
DNDVKNFWST RQKRLARILR TPLPSRSNKN HGKLPLSSHQ VPNLEDPSLD RILFEENGGC  180
NQKATKMTQI PDIVSLDTAL PLLELELAME KEPCLSDPAP PSQPPFDHLP HPLLVDLPLP  240
VLPEDAPGLS PGFGDAIFPG GLACPEAPPE GLPFLGMDAG HDDIESVDEH PGTSTDFFDD  300
LPADMFDYLE PPPPPPPASS TSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-273113425126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919667.10.0probable transcription factor MYB58
SwissprotQ0JB899e-76MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLA0A2H3X4N41e-174A0A2H3X4N4_PHODC; probable transcription factor MYB58
STRINGXP_008778249.11e-174(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.15e-63MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]