PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010919206.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 429aa    MW: 46291.1 Da    PI: 7.9107
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010919206.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.26.1e-08107127526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G C +G++C+F H+
  XP_010919206.1 107 VCNYFLA-GNCTFGESCRFLHS 127
                     6**9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.2772854IPR000571Zinc finger, CCCH-type
SMARTSM003560.293053IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155102129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6104127IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5104128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-6106127IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5107127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.107.3E-38130420IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.16E-37132181IPR017986WD40-repeat-containing domain
SMARTSM003207.5E-5133172IPR001680WD40 repeat
PfamPF004004.4E-4136171IPR001680WD40 repeat
PROSITE profilePS5008212.881140181IPR001680WD40 repeat
PROSITE profilePS5029416.216140342IPR017986WD40-repeat-containing domain
PRINTSPR003201.9E-6159173IPR020472G-protein beta WD-40 repeat
SMARTSM00320320212249IPR001680WD40 repeat
SuperFamilySSF509781.16E-37219425IPR017986WD40-repeat-containing domain
SMARTSM003200.0031256293IPR001680WD40 repeat
PfamPF004000.0077260293IPR001680WD40 repeat
PROSITE profilePS5008211.979263302IPR001680WD40 repeat
PROSITE patternPS006780280294IPR019775WD40 repeat, conserved site
PRINTSPR003201.9E-6280294IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0068296333IPR001680WD40 repeat
PfamPF004000.012298332IPR001680WD40 repeat
PRINTSPR003201.9E-6320334IPR020472G-protein beta WD-40 repeat
SMARTSM00320380374420IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDNKTADRYG NKRAHQRVGS SAAAAVPDRA NKVCYHWRAG RCNRHPCPFV HSELPAQLDG  60
VAAKRTHHQG LVWRNPNSGG GNSTPSSKWG KGPGGGAAXP DKVPDKVCNY FLAGNCTFGE  120
SCRFLHSWFI GDSFSLLTPL QGHQKAVTGI ALPSGSDKLY SGSQDESVRV WXCQSGQCVG  180
IINLGGQIGC MISEGPWVFI GIPHAVKAWN TQTAIDLSLS GPAGQVYALA VGNMMVFAGT  240
QGGRILAWKF SAVGNCFEPA ASLSGHQLAV VSLVVGAMRL YSGSMDRTIK VWDLATLQCI  300
QTLTDHVSVV MSVLCWDQFL LSCSLDQTIK VWVATESGNY EVTYTHNEEH GVLALCGMHD  360
AQARPVLPCS CNDNSTRIYD LPAFSERGKI FSKEEMRAIQ IGPGGLFFTG EGTGELKVWK  420
WLTNETPTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-191373328322Tako8
6g6n_A2e-191373328322Tako8
6g6n_B2e-191373328322Tako8
6g6n_C2e-191373328322Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933903.10.0zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP50.0C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A2H3Y9890.0A0A2H3Y989_PHODC; zinc finger CCCH domain-containing protein 17-like
STRINGXP_008795362.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]