PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010919035.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 720aa MW: 79627.5 Da PI: 6.9083 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.7 | 2e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ XP_010919035.1 24 RERWTEEEHNRFLEALKLYGRA-WQRIQEHVG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.28E-17 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.859 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.8E-16 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 9.0E-14 | 23 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-9 | 24 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.7E-14 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.61E-10 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence Send to blast |
MEGSSSGEDL IVKRRKPYTI TKRRERWTEE EHNRFLEALK LYGRAWQRIQ EHVGTKTAVQ 60 IRSHAQKFFS KLEKEALAKG IPLGHSHDIE IPPPRPKRKP SFPYPRKVDV GSLSPFEESK 120 DEKVSNSAAS QEPVATEVEQ RTKRTSGGGS CSEVFNLLQD VPSASMSSAN KGSSNICTFQ 180 HYVKEVKDKA AQGESSKTVK GNYEEEKKEA DHTDIDVDRL GRISLHSQSK FAHEERRDAR 240 KETEKFGPSL EDNQQGAQCY SKLIPGQFMD RNNAKCKQTV CSNEFIMPGT NQVEAHTDVN 300 PFKNPITLPG HESCSNCTVP SAHQQVPVFP PFTQFGSNQD AYVSFLSSAS SSLILSTLLQ 360 NSSIHAVASL AASFWPSVNA NAPIDLTAGN LNGGMSEKQS NPSPSMAAIA AATVAAASAW 420 WATNGLLPMF PPFHPSYAFA PPSTVPGPSV DMAQAPEDNK EKKDDRPQNL LQEDHQQIMD 480 PGHPGALRTT QKASKLLPSS ESELYECGRG ERSLYAKLKS SAADQFEALP DTGFLDSGKT 540 QHNKNSNRSS YSSNTLSSSE VETETMIKKH KEVNDEAEQV HLDNHLFGEA SNHRLGSSRV 600 TNGSWKEVLG EDGPAFQAHS TRELMPQRFS QLQTNDDEMP NLCKDKEVTA LPVDLRRKAC 660 ESTNKFNIDS EDTLVSEIEN GKLKASRRAF KPYRRCSVEA KDNQATTDEG KSDKRIRMEG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010919035.1 | 0.0 | protein LHY isoform X2 | ||||
TrEMBL | A0A2H3Z511 | 0.0 | A0A2H3Z511_PHODC; protein LHY isoform X2 | ||||
STRING | XP_008808259.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46830.1 | 1e-42 | circadian clock associated 1 |