PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010918779.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 20660.8 Da PI: 8.674 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.1 | 4e-40 | 4 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC++dC++apyf +eq +++fa++hk+FGasnv+kll ++p ++r +a+ s++yeA+ar++dPvyG+vg+i++lqqq+++l+ +l XP_010918779.1 4 PCGACKFLRRKCTADCIFAPYFGSEQgAARFAAIHKVFGASNVSKLLLHVPLHDRCEAVVSIAYEAQARLKDPVYGCVGHIFALQQQVASLQLQL 98 7***********************9989******************************************************************9 PP DUF260 95 allkee 100 ++k++ XP_010918779.1 99 MQAKAQ 104 999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.395 | 3 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.0E-39 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MASPCGACKF LRRKCTADCI FAPYFGSEQG AARFAAIHKV FGASNVSKLL LHVPLHDRCE 60 AVVSIAYEAQ ARLKDPVYGC VGHIFALQQQ VASLQLQLMQ AKAQLAQSLK NSQTPENQYI 120 GNAANPLIRP YSNTKSSSPQ SSLDCIDQNP DGLLPMQQMP FRGELSTPRV VTQYEVGELQ 180 ALASKMMKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-37 | 2 | 105 | 9 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-37 | 2 | 105 | 9 | 111 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010918779.1 | 1e-139 | LOB domain-containing protein 16-like | ||||
Swissprot | Q9SLB7 | 4e-66 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A2H3YN89 | 1e-111 | A0A2H3YN89_PHODC; LOB domain-containing protein 16-like | ||||
STRING | XP_008801296.1 | 1e-112 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10599 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 2e-53 | lateral organ boundaries-domain 16 |