PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010918724.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 655aa    MW: 74364.6 Da    PI: 9.5966
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010918724.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.64.2e-2881170189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     +fY +YA+++GF+ r+s+  +skr+++i++r++vCs+eg+r++++ + + +++r+r+ tr+gC+a+++vkk+++gkw+v+k+e+ HnH l
  XP_010918724.1  81 SFYIAYATQMGFKARVSSFIRSKRDKTIISRQLVCSREGFRSTKDANnEGRTKRPRMITRVGCRAMIMVKKQSSGKWVVSKFEKIHNHVL 170
                     59***************************************99998846688899*********************************87 PP

2FAR197.31.7e-30241331291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fY+eYA++vGF+ r+s+ ++skr+++i++r  vCskeg+r++++++ +e+ +r+ra+tr+gCka+++vkk+++gkw v+kl+++HnH+lap
  XP_010918724.1 241 FYKEYARRVGFRARVSSYYRSKRDNSIISRLIVCSKEGFRAKKDENaEERLQRPRAVTRVGCKAMIMVKKRDSGKWIVSKLVKHHNHALAP 331
                     9****************************************9999956667889**********************************986 PP

3FAR189.16.4e-28380468289
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     fY +Y+++vGF++r+s+ ++skr+++i++r fvCskeg+  +++ + + k +r+r+ tr+gCka+l+vkk++ gkw v+k+e++HnH+l
  XP_010918724.1 380 FYFAYSRRVGFNMRVSTYYRSKRDKSIISRLFVCSKEGFYVKKDASsEGKIKRPREATRVGCKAMLMVKKNNCGKWIVSKFEKDHNHPL 468
                     9**************************************98887774678899**********************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-2681170IPR004330FAR1 DNA binding domain
PfamPF031012.4E-28241331IPR004330FAR1 DNA binding domain
PfamPF031014.6E-26380468IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MEVDLAILEA LLLNLLSFHK HVCHGKLPSD EAWILKPGID VEPRIGDVED IMDNSVARDL  60
FEPILEPYEG LEFDSEDAAK SFYIAYATQM GFKARVSSFI RSKRDKTIIS RQLVCSREGF  120
RSTKDANNEG RTKRPRMITR VGCRAMIMVK KQSSGKWVVS KFEKIHNHVL GTQGKVVMLD  180
YDPYVRENDE VIENPSGNET NAHGGFVGNA NEMVVVPPEG DPHLEPRVGM EFESQQEAQG  240
FYKEYARRVG FRARVSSYYR SKRDNSIISR LIVCSKEGFR AKKDENAEER LQRPRAVTRV  300
GCKAMIMVKK RDSGKWIVSK LVKHHNHALA PRTASDDECS EAEDDEMVKI ERALVAHEGD  360
AITEPYEGME FESEESAKLF YFAYSRRVGF NMRVSTYYRS KRDKSIISRL FVCSKEGFYV  420
KKDASSEGKI KRPREATRVG CKAMLMVKKN NCGKWIVSKF EKDHNHPLGS LRKLRKLRKR  480
KHSSGNLKKK NQIELNHADR ESPTLRYNNL CREAMKYAEA GAASPDVYNV AMRALQEAVK  540
KVAAIKRNSG VVPRLGTDVS GGNIEDNNNQ YCEVESPSHL NQQSRTRTHS SHSPSKASYE  600
RPPRKLRLCN ACKLPSDHTS RSCPTKQQVS IVPNEAINVI SDEPINELIQ QGDLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029119796.10.0uncharacterized protein LOC105043030
TrEMBLM0S6Q00.0M0S6Q0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P10090_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90313345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.14e-48FAR1-related sequence 7