PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010918724.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | FAR1 | ||||||||
Protein Properties | Length: 655aa MW: 74364.6 Da PI: 9.5966 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 89.6 | 4.2e-28 | 81 | 170 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +YA+++GF+ r+s+ +skr+++i++r++vCs+eg+r++++ + + +++r+r+ tr+gC+a+++vkk+++gkw+v+k+e+ HnH l XP_010918724.1 81 SFYIAYATQMGFKARVSSFIRSKRDKTIISRQLVCSREGFRSTKDANnEGRTKRPRMITRVGCRAMIMVKKQSSGKWVVSKFEKIHNHVL 170 59***************************************99998846688899*********************************87 PP | |||||||
2 | FAR1 | 97.3 | 1.7e-30 | 241 | 331 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYA++vGF+ r+s+ ++skr+++i++r vCskeg+r++++++ +e+ +r+ra+tr+gCka+++vkk+++gkw v+kl+++HnH+lap XP_010918724.1 241 FYKEYARRVGFRARVSSYYRSKRDNSIISRLIVCSKEGFRAKKDENaEERLQRPRAVTRVGCKAMIMVKKRDSGKWIVSKLVKHHNHALAP 331 9****************************************9999956667889**********************************986 PP | |||||||
3 | FAR1 | 89.1 | 6.4e-28 | 380 | 468 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +Y+++vGF++r+s+ ++skr+++i++r fvCskeg+ +++ + + k +r+r+ tr+gCka+l+vkk++ gkw v+k+e++HnH+l XP_010918724.1 380 FYFAYSRRVGFNMRVSTYYRSKRDKSIISRLFVCSKEGFYVKKDASsEGKIKRPREATRVGCKAMLMVKKNNCGKWIVSKFEKDHNHPL 468 9**************************************98887774678899**********************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-26 | 81 | 170 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 2.4E-28 | 241 | 331 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 4.6E-26 | 380 | 468 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 655 aa Download sequence Send to blast |
MEVDLAILEA LLLNLLSFHK HVCHGKLPSD EAWILKPGID VEPRIGDVED IMDNSVARDL 60 FEPILEPYEG LEFDSEDAAK SFYIAYATQM GFKARVSSFI RSKRDKTIIS RQLVCSREGF 120 RSTKDANNEG RTKRPRMITR VGCRAMIMVK KQSSGKWVVS KFEKIHNHVL GTQGKVVMLD 180 YDPYVRENDE VIENPSGNET NAHGGFVGNA NEMVVVPPEG DPHLEPRVGM EFESQQEAQG 240 FYKEYARRVG FRARVSSYYR SKRDNSIISR LIVCSKEGFR AKKDENAEER LQRPRAVTRV 300 GCKAMIMVKK RDSGKWIVSK LVKHHNHALA PRTASDDECS EAEDDEMVKI ERALVAHEGD 360 AITEPYEGME FESEESAKLF YFAYSRRVGF NMRVSTYYRS KRDKSIISRL FVCSKEGFYV 420 KKDASSEGKI KRPREATRVG CKAMLMVKKN NCGKWIVSKF EKDHNHPLGS LRKLRKLRKR 480 KHSSGNLKKK NQIELNHADR ESPTLRYNNL CREAMKYAEA GAASPDVYNV AMRALQEAVK 540 KVAAIKRNSG VVPRLGTDVS GGNIEDNNNQ YCEVESPSHL NQQSRTRTHS SHSPSKASYE 600 RPPRKLRLCN ACKLPSDHTS RSCPTKQQVS IVPNEAINVI SDEPINELIQ QGDLQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029119796.1 | 0.0 | uncharacterized protein LOC105043030 | ||||
TrEMBL | M0S6Q0 | 0.0 | M0S6Q0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P10090_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9031 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 4e-48 | FAR1-related sequence 7 |